API for dartR.popgen
Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis
| Global functions | |
|---|---|
| .onAttach | Source code |
| EffectiveNumberSamplesMLE | Source code |
| FstDistPlotter | Source code |
| FstDistPlotterAddBadCurve | Source code |
| FstDistPlotterZoom | Source code |
| G | Source code |
| IncompleteGammaFunction | Source code |
| J | Source code |
| J_largeK | Source code |
| J_perm | Source code |
| OutFLANKBadCurvePlotter | Source code |
| WC_FST_Diploids_2Alleles | Source code |
| WC_FST_FiniteSample_Diploids_2Alleles | Source code |
| WC_FST_FiniteSample_Diploids_2Alleles_NoCorr | Source code |
| WC_FST_FiniteSample_Haploids_2AllelesB_MCW | Source code |
| WC_FST_FiniteSample_Haploids_2AllelesB_NoSamplingCorrection | Source code |
| averagePairWiseSimilarityH | Source code |
| calcThreshold | Source code |
| clumpp | Source code |
| fstBarCalculator | Source code |
| fstBarCalculatorNoCorr | Source code |
| getFSTs_diploids | Source code |
| getStephens | Source code |
| get_best_permutation | Source code |
| gl.LDNe | Man page Source code |
| gl.blast | Man page Source code |
| gl.collapse | Man page Source code |
| gl.evanno | Man page Source code |
| gl.ld.distance | Man page Source code |
| gl.ld.haplotype | Man page Source code |
| gl.map.structure | Man page Source code |
| gl.nhybrids | Man page Source code |
| gl.outflank | Man page Source code |
| gl.plot.faststructure | Man page Source code |
| gl.plot.structure | Man page Source code |
| gl.run.epos | Man page Source code |
| gl.run.faststructure | Man page Source code |
| gl.run.stairway2 | Man page Source code |
| gl.run.structure | Man page Source code |
| gl.sfs | Man page Source code |
| iterativeGreedy | Source code |
| largeKGreedy | Source code |
| mcl | Source code |
| memoryGreedy | Source code |
| negLLdfFstTrim | Source code |
| outputDFStarterNoCorr | Source code |
| pOutlierFinderChiSqNoCorr | Source code |
| pTwoSidedFromChiSq | Source code |
| permn | Source code |
| rotate.matrix | Source code |
| utils.outflank | Man page Source code |
| utils.outflank.MakeDiploidFSTMat | Man page Source code |
| utils.outflank.plotter | Man page Source code |
| utils.read.ped | Source code |
| utils.structure.evanno | Man page Source code |
| utils.structure.genind2gtypes | Man page Source code |
| utils.structure.run | Man page Source code |
| zzz | Man page |
