Files in ddtlcm

Latent Class Analysis with Dirichlet Diffusion Tree Process Prior

NEWS.md README.md R/summary_functions.R R/plot_functions.R R/data.R R/MH_tree.R R/predict.R R/Gibbs_lcm.R R/print_functions.R R/simulate_DDT_functions.R R/ddtlcm_fit.R R/ddtlcm-package.R R/initialization.R R/utils.R R/loglikehoods.R inst/ddtlcm_output_example.pdf inst/doc/ddtlcm-demo.R inst/doc/ddtlcm-demo.Rmd tests/testthat.R tests/testthat/test-summary_functions.R tests/testthat/test-loglikehoods.R tests/testthat/test-print_functions.R tests/testthat/test-plot_functions.R tests/testthat/test-initialization.R tests/testthat/test-utils.R tests/testthat/test-predict.R tests/testthat/test-simulate_DDT_functions.R tests/testthat/test-ddtlcm_fit.R vignettes/ddtlcm-demo.Rmd man/print.ddt_lcm.Rd man/quiet.Rd man/add_one_sample.Rd man/predict.ddt_lcm.Rd man/sample_sigmasq.Rd man/logllk_location.Rd man/attach_subtree.Rd man/sample_c_two.Rd man/proposal_log_prob.Rd man/predict.summary.ddt_lcm.Rd man/logllk_tree_topology.Rd man/logllk_ddt_lcm.Rd man/simulate_parameter_on_tree.Rd man/logllk_ddt.Rd man/logit.Rd man/logllk_lcm.Rd man/initialize_hclust.Rd man/H_n.Rd man/compute_IC.Rd man/plot_tree_with_barplot.Rd man/simulate_DDT_tree.Rd man/sample_c_one.Rd man/create_leaf_cor_matrix.Rd man/add_root.Rd man/ddtlcm_fit.Rd man/add_multichotomous_tip.Rd man/data_synthetic.Rd man/result_diet_1000iters.Rd man/sample_tree_topology.Rd man/sample_leaf_locations_pg.Rd man/div_time.Rd man/WAIC.Rd man/add_leaf_branch.Rd man/logllk_div_time_two.Rd man/exp_normalize.Rd man/print.summary.ddt_lcm.Rd man/reattach_point.Rd man/plot.summary.ddt_lcm.Rd man/logllk_div_time_one.Rd man/random_detach_subtree.Rd man/log_expit.Rd man/initialize.Rd man/J_n.Rd man/a_t_two.Rd man/initialize_randomLCM.Rd man/draw_mnorm.Rd man/plot.ddt_lcm.Rd man/ddtlcm-package.Rd man/sample_class_assignment.Rd man/simulate_lcm_given_tree.Rd man/parameter_diet.Rd man/a_t_one.Rd man/plot_tree_with_heatmap.Rd man/initialize_poLCA.Rd man/simulate_lcm_response.Rd man/expit.Rd man/summary.ddt_lcm.Rd