dependentsimr: Simulate Omics-Scale Data with Dependency

Using a Gaussian copula approach, this package generates simulated data mimicking a target real dataset. It supports normal, Poisson, empirical, and 'DESeq2' (negative binomial with size factors) marginal distributions. It uses an low-rank plus diagonal covariance matrix to efficiently generate omics-scale data. Methods are described in: Yang, Grant, and Brooks (2025) <doi:10.1101/2025.01.31.634335>.

Package details

AuthorThomas Brooks [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-6980-0079>)
MaintainerThomas Brooks <tgbrooks@gmail.com>
LicenseMIT + file LICENSE
Version1.0.0.0
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("dependentsimr")

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dependentsimr documentation built on Aug. 8, 2025, 6:23 p.m.