API for dimRed
A Framework for Dimensionality Reduction

Global functions
.maximize_correlation	Source code
AUC_lnK_R_NX	Man page
AUC_lnK_R_NX,dimRedResult-method	Man page
DRR	Man page
DRR-class	Man page
DiffusionMaps	Man page
DiffusionMaps-class	Man page
DrL	Man page
DrL-class	Man page
FastICA	Man page
FastICA-class	Man page
FruchtermanReingold	Man page
FruchtermanReingold-class	Man page
HLLE	Man page
HLLE-class	Man page
Isomap	Man page
Isomap-class	Man page
KamadaKawai	Man page
KamadaKawai-class	Man page
LCMC	Man page
LCMC,dimRedResult-method	Man page
MDS	Man page
MDS-class	Man page
NNMF	Man page
NNMF-class	Man page
PCA	Man page
PCA-class	Man page
PCA_L1	Man page
PCA_L1-class	Man page
Q_NX	Man page
Q_NX,dimRedResult-method	Man page
Q_global	Man page
Q_global,dimRedResult-method	Man page
Q_local	Man page
Q_local,dimRedResult-method	Man page
R_NX	Man page
R_NX,dimRedResult-method	Man page
UMAP	Man page
UMAP-class	Man page
[,dimRedData,ANY,ANY,ANY-method	Man page
as.data.frame	Man page
as.data.frame,dimRedData-method	Man page
as.data.frame,dimRedResult-method	Man page
as.dimRedData	Man page
as.dimRedData,formula-method	Man page
auc_ln_k_inv	Source code
auc_log10_k	Source code
auc_log_k	Source code
cophenetic_correlation	Man page
cophenetic_correlation,dimRedResult-method	Man page
cube	Source code
dataSetList	Man page
dataSets	Man page
dimRed	Man page
dimRed-package	Man page
dimRedData	Man page
dimRedData-class	Man page
dimRedMethod-class	Man page
dimRedMethodList	Man page
dimRedQualityList	Man page
dimRedResult	Man page
dimRedResult-class	Man page
distance_correlation	Man page
distance_correlation,dimRedResult-method	Man page
em_graph_layout	Source code
embed	Man page
embed,ANY-method	Man page
embed,dimRedData-method	Man page
embed,formula-method	Man page
embed_graph	Source code
getData	Man page
getData,dimRedData-method	Man page
getDimRedData	Man page
getDimRedData,dimRedResult-method	Man page
getMeta	Man page
getMeta,dimRedData-method	Man page
getMethodDependencies	Source code
getNDim	Man page
getNDim,dimRedResult-method	Man page
getOrgData	Man page
getOrgData,dimRedResult-method	Man page
getOtherData	Man page
getOtherData,dimRedResult-method	Man page
getPars	Man page
getPars,dimRedResult-method	Man page
getRotationMatrix	Man page Source code
get_planes	Source code
installSuggests	Man page
inverse	Man page
inverse,dimRedResult-method	Man page
irisdata	Source code
kPCA	Man page
kPCA-class	Man page
loadDataSet	Man page
makeEpsSparseMatrix	Source code
makeKNNgraph	Man page Source code
maximize_correlation	Man page
maximize_correlation,dimRedResult-method	Man page
mean_R_NX	Man page
mean_R_NX,dimRedResult-method	Man page
method_can_run	Source code
mixColor1Ramps	Man page
mixColor2Ramps	Man page
mixColor3Ramps	Man page
mixColorRamps	Man page
nMDS	Man page
nMDS-class	Man page
ndims	Man page
ndims,dimRedData-method	Man page
ndims,dimRedResult-method	Man page
noisyHelixMapping	Source code
nrow,dimRedData-method	Man page
obj	Source code
plot	Man page
plot,dimRedData,ANY-method	Man page
plot,dimRedResult,ANY-method	Man page
plot.dimRed	Man page
plot.dimRedData	Man page
plot.dimRedResult	Man page
plot_R_NX	Man page Source code
predict,dimRedResult-method	Man page
print	Man page
print,dimRedResult-method	Man page
qnx2rnx	Source code
quality	Man page
quality,dimRedResult-method	Man page
quality.dimRedResult	Man page
reconstruction_error	Man page
reconstruction_error,dimRedResult-method	Man page
reconstruction_rmse	Man page
reconstruction_rmse,dimRedResult-method	Man page
rnx2qnx	Source code
scale01	Source code
tSNE	Man page
tSNE-class	Man page
total_correlation	Man page
total_correlation,dimRedResult-method	Man page