dynamite
Bayesian Modeling and Causal Inference for Multivariate Longitudinal Data

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dynamite: Bayesian Modeling and Causal Inference for Multivariate Longitudinal Data
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API for dynamite
Bayesian Modeling and Causal Inference for Multivariate Longitudinal Data

Global functions
+.dynamiteformula Man page
.onAttach Source code
R_version Source code
`+.dynamiteformula` Source code
abort_factor Source code
abort_negative Source code
abort_nonunit Source code
add_dynamiteformula Source code
as.data.frame.dynamitefit Man page Source code
as.data.table Man page
as.data.table.dynamitefit Man page Source code
as_data_table_alpha Source code
as_data_table_beta Source code
as_data_table_corr Source code
as_data_table_corr_nu Source code
as_data_table_corr_psi Source code
as_data_table_cutpoint Source code
as_data_table_default Source code
as_data_table_delta Source code
as_data_table_kappa Source code
as_data_table_lambda Source code
as_data_table_nu Source code
as_data_table_omega Source code
as_data_table_omega_alpha Source code
as_data_table_omega_psi Source code
as_data_table_phi Source code
as_data_table_psi Source code
as_data_table_sigma Source code
as_data_table_sigma_lambda Source code
as_data_table_sigma_nu Source code
as_data_table_tau Source code
as_data_table_tau_alpha Source code
as_data_table_tau_psi Source code
as_data_table_zeta Source code
as_draws Man page
as_draws.dynamitefit Man page Source code
as_draws_df Man page
as_draws_df.dynamitefit Man page Source code
assign_deterministic Source code
assign_deterministic_predict Source code
assign_from_storage Source code
assign_initial_values Source code
assign_lags Source code
assign_lags_init Source code
assign_summaries Source code
aux Man page Source code
categorical_example Man page
categorical_example_fit Man page
cbind_datatable Source code
check_ndraws Source code
check_newdata Source code
check_offset Source code
check_priors Source code
check_stan_args Source code
check_trials Source code
clear_nonfixed Source code
coef.dynamitefit Man page Source code
complete_lags Source code
confint.dynamitefit Man page Source code
count_random_effects Source code
create_blocks Source code
create_data Source code
create_data_lines Source code
create_functions Source code
create_functions_lines Source code
create_generated_quantities Source code
create_generated_quantities_lines Source code
create_model Source code
create_model_lines Source code
create_parameters Source code
create_parameters_lines Source code
create_transformed_data Source code
create_transformed_data_lines Source code
create_transformed_parameters Source code
create_transformed_parameters_lines Source code
create_vectorized_prior Source code
cs Source code
dag_formatter Source code
data_lines_bernoulli Source code
data_lines_beta Source code
data_lines_binomial Source code
data_lines_categorical Source code
data_lines_cumulative Source code
data_lines_default Source code
data_lines_exponential Source code
data_lines_gamma Source code
data_lines_gaussian Source code
data_lines_multinomial Source code
data_lines_mvgaussian Source code
data_lines_negbin Source code
data_lines_poisson Source code
data_lines_student Source code
default_link Source code
default_priors Source code
deterministic_response Source code
drop_terms Source code
drop_unused Source code
dynamice Man page Source code
dynamite Man page Source code
dynamite-deprecated Man page
dynamite-package Man page
dynamite_check Source code
dynamite_model Source code
dynamite_sampling Source code
dynamite_stan Source code
dynamitechannel Source code
dynamitefamily Source code
dynamiteformula Man page Source code
evaluate_deterministic Source code
evaluate_specials Source code
expand_predict_output Source code
extract_lags Source code
extract_vectorizable_priors Source code
fill_time Source code
fill_time_predict Source code
filter_params Source code
finalize_predict Source code
find_lag_orders Source code
find_lags Source code
find_nonlags Source code
fitted.dynamitefit Man page Source code
formula.dynamitefit Man page Source code
formula_lhs Source code
formula_past Source code
formula_rhs Source code
formula_specials Source code
formula_terms Source code
full_model.matrix Source code
full_model.matrix_predict Source code
functions_lines_bernoulli Source code
functions_lines_beta Source code
functions_lines_binomial Source code
functions_lines_categorical Source code
functions_lines_cumulative Source code
functions_lines_exponential Source code
functions_lines_gamma Source code
functions_lines_gaussian Source code
functions_lines_multinomial Source code
functions_lines_mvgaussian Source code
functions_lines_negbin Source code
functions_lines_poisson Source code
functions_lines_student Source code
gaussian_example Man page
gaussian_example_fit Man page
generate_random_effect Source code
generate_sim_call_multivariate Source code
generate_sim_call_univariate Source code
generated_quantities_lines_bernoulli Source code
generated_quantities_lines_beta Source code
generated_quantities_lines_binomial Source code
generated_quantities_lines_categorical Source code
generated_quantities_lines_cumulative Source code
generated_quantities_lines_default Source code
generated_quantities_lines_exponential Source code
generated_quantities_lines_gamma Source code
generated_quantities_lines_gaussian Source code
generated_quantities_lines_multinomial Source code
generated_quantities_lines_mvgaussian Source code
generated_quantities_lines_negbin Source code
generated_quantities_lines_poisson Source code
generated_quantities_lines_student Source code
get_algorithm Man page Source code
get_algorithm.CmdStanMCMC Man page Source code
get_algorithm.CmdStanMCMC_CSV Man page Source code
get_algorithm.stanfit Man page Source code
get_channel Source code
get_code Man page Source code
get_code.dynamitefit Man page Source code
get_code.dynamiteformula Man page Source code
get_code_ Source code
get_dag Source code
get_data Man page Source code
get_data.dynamitefit Man page Source code
get_data.dynamiteformula Man page Source code
get_diagnostics Man page Source code
get_diagnostics.CmdStanMCMC Man page Source code
get_diagnostics.CmdStanMCMC_CSV Man page Source code
get_diagnostics.stanfit Man page Source code
get_draws Man page Source code
get_draws.CMdStanMCMC_CSV Man page Source code
get_draws.CmdStanMCMC Man page Source code
get_draws.stanfit Man page Source code
get_elapsed_time Man page Source code
get_elapsed_time.CmdStanMCMC Man page Source code
get_elapsed_time.CmdStanMCMC_CSV Man page Source code
get_elapsed_time.stanfit Man page Source code
get_families Source code
get_imputed_long Source code
get_imputed_wide Source code
get_lag_orders Source code
get_lag_terms Source code
get_markov_blanket Source code
get_max_treedepth Man page Source code
get_max_treedepth.CmdStanMCMC Man page Source code
get_max_treedepth.CmdStanMCMC_CSV Man page Source code
get_max_treedepth.stanfit Man page Source code
get_model_code Man page Source code
get_model_code.CmdStanMCMC Man page Source code
get_model_code.CmdStanMCMC_CSV Man page Source code
get_model_code.stanfit Man page Source code
get_names Source code
get_nchains Man page Source code
get_nchains.CmdStanMCMC Man page Source code
get_nchains.CmdStanMCMC_CSV Man page Source code
get_nchains.stanfit Man page Source code
get_ndraws Man page Source code
get_ndraws.CmdStanMCMC Man page Source code
get_ndraws.CmdStanMCMC_CSV Man page Source code
get_ndraws.stanfit Man page Source code
get_nonlag_terms Source code
get_originals Source code
get_parameter_dims Man page Source code
get_parameter_dims.dynamitefit Man page Source code
get_parameter_dims.dynamiteformula Man page Source code
get_parameter_names Man page Source code
get_parameter_names.dynamitefit Man page Source code
get_parameter_types Man page Source code
get_parameter_types.dynamitefit Man page Source code
get_parameters Source code
get_pars_oi Man page Source code
get_pars_oi.CmdStanMCMC Man page Source code
get_pars_oi.CmdStanMCMC_CSV Man page Source code
get_pars_oi.stanfit Man page Source code
get_priors Man page Source code
get_priors.dynamitefit Man page Source code
get_priors.dynamiteformula Man page Source code
get_quoted Source code
get_responses Source code
get_rhs Source code
get_special_term_indices Source code
get_special_terms Source code
get_type_formula Source code
get_univariate Source code
glue_cs Source code
has_past Source code
has_univariate Source code
hmc_diagnostics Man page Source code
hmc_diagnostics.dynamitefit Man page Source code
ifelse_ Source code
impute_long Source code
impute_newdata Source code
impute_wide Source code
increment_formula Source code
indenter_ Source code
initialize_deterministic Source code
initialize_multivariate_channel Source code
initialize_predict Source code
initialize_univariate_channel Source code
intercept_lines Source code
is.dynamitefamily Source code
is.dynamitefit Source code
is.dynamiteformula Source code
is_multivariate Source code
is_supported_family Source code
is_supported_link Source code
is_windows Source code
join_dynamiteformulas Source code
lag_ Source code
lags Man page Source code
lead_ Source code
lfactor Man page Source code
lfo Man page Source code
lfo.dynamitefit Man page Source code
lines_wrap Source code
locf Source code
log_mean_exp Source code
log_sum_exp Source code
log_sum_exp_rows Source code
loglik_lines_bernoulli Source code
loglik_lines_beta Source code
loglik_lines_binomial Source code
loglik_lines_categorical Source code
loglik_lines_cumulative Source code
loglik_lines_default Source code
loglik_lines_exponential Source code
loglik_lines_finalize Source code
loglik_lines_gamma Source code
loglik_lines_gaussian Source code
loglik_lines_multinomial Source code
loglik_lines_mvgaussian Source code
loglik_lines_negbin Source code
loglik_lines_poisson Source code
loglik_lines_student Source code
loo Man page
loo.dynamitefit Man page Source code
matrix_intersect Source code
mcmc_diagnostics Man page Source code
mcmc_diagnostics.dynamitefit Man page Source code
message_ Source code
mice.impute.lag Man page Source code
mice.impute.lead Man page Source code
missing_data_lines Source code
model_lines_bernoulli Source code
model_lines_beta Source code
model_lines_binomial Source code
model_lines_categorical Source code
model_lines_cumulative Source code
model_lines_default Source code
model_lines_exponential Source code
model_lines_gamma Source code
model_lines_gaussian Source code
model_lines_multinomial Source code
model_lines_mvgaussian Source code
model_lines_negbin Source code
model_lines_poisson Source code
model_lines_student Source code
multichannel_example Man page
multichannel_example_fit Man page
ndraws Man page
ndraws.dynamitefit Man page Source code
nobs.dynamitefit Man page Source code
nocb Source code
obs Man page
onlyif Source code
parameters_lines_bernoulli Source code
parameters_lines_beta Source code
parameters_lines_binomial Source code
parameters_lines_categorical Source code
parameters_lines_cumulative Source code
parameters_lines_default Source code
parameters_lines_exponential Source code
parameters_lines_gamma Source code
parameters_lines_gaussian Source code
parameters_lines_multinomial Source code
parameters_lines_mvgaussian Source code
parameters_lines_negbin Source code
parameters_lines_poisson Source code
parameters_lines_student Source code
parse_components Source code
parse_data Source code
parse_formula Source code
parse_funs Source code
parse_global_lags Source code
parse_lags Source code
parse_lfactor Source code
parse_new_lags Source code
parse_newdata Source code
parse_past Source code
parse_predictors_long Source code
parse_predictors_wide Source code
parse_present_lags Source code
parse_random_spec Source code
parse_singleton_lags Source code
parse_splines Source code
paste_rows Source code
plot.dynamitefit Man page Source code
plot.dynamiteformula Man page Source code
plot.lfo Man page Source code
plot_betas Man page Source code
plot_deltas Man page Source code
plot_dynamiteformula_ggplot Source code
plot_dynamiteformula_tikz Source code
plot_fixed Source code
plot_lambdas Man page Source code
plot_nus Man page Source code
plot_psis Man page Source code
plot_trace Source code
plot_varying Source code
predict.dynamitefit Man page Source code
predict_ Source code
prepare_channel_bernoulli Source code
prepare_channel_beta Source code
prepare_channel_binomial Source code
prepare_channel_categorical Source code
prepare_channel_cumulative Source code
prepare_channel_default Source code
prepare_channel_exponential Source code
prepare_channel_gamma Source code
prepare_channel_gaussian Source code
prepare_channel_multinomial Source code
prepare_channel_mvgaussian Source code
prepare_channel_negbin Source code
prepare_channel_poisson Source code
prepare_channel_student Source code
prepare_common_priors Source code
prepare_eval_env_multivariate Source code
prepare_eval_env_univariate Source code
prepare_eval_envs Source code
prepare_lagged_response Source code
prepare_stan_input Source code
print.dynamitefit Man page Source code
print.dynamiteformula Man page Source code
print.lfo Man page Source code
prior_data_lines Source code
prior_lines Source code
random_spec Man page Source code
rank_ Source code
rbindlist_ Source code
remove_redundant_parameters Source code
sampling_info Source code
set_lags Source code
set_lfactor Source code
set_random_spec Source code
set_splines Source code
shift_simulated_values Source code
splines Man page Source code
stan_array Source code
stan_array_arg Source code
stan_name Source code
stan_supports_array_keyword Source code
stan_supports_categorical_logit_glm Source code
stan_supports_glm_likelihood Source code
stan_version Source code
stan_version_is_functional Source code
startup Source code
stop_ Source code
stopifnot_ Source code
str_quote Source code
str_unquote Source code
summary.dynamitefit Man page Source code
test_collinearity Source code
topological_order Source code
transformed_data_lines_bernoulli Source code
transformed_data_lines_beta Source code
transformed_data_lines_binomial Source code
transformed_data_lines_categorical Source code
transformed_data_lines_cumulative Source code
transformed_data_lines_default Source code
transformed_data_lines_exponential Source code
transformed_data_lines_gamma Source code
transformed_data_lines_gaussian Source code
transformed_data_lines_multinomial Source code
transformed_data_lines_mvgaussian Source code
transformed_data_lines_negbin Source code
transformed_data_lines_poisson Source code
transformed_data_lines_student Source code
transformed_parameters_lines_bernoulli Source code
transformed_parameters_lines_beta Source code
transformed_parameters_lines_binomial Source code
transformed_parameters_lines_categorical Source code
transformed_parameters_lines_cumulative Source code
transformed_parameters_lines_default Source code
transformed_parameters_lines_exponential Source code
transformed_parameters_lines_gamma Source code
transformed_parameters_lines_gaussian Source code
transformed_parameters_lines_multinomial Source code
transformed_parameters_lines_mvgaussian Source code
transformed_parameters_lines_negbin Source code
transformed_parameters_lines_poisson Source code
transformed_parameters_lines_student Source code
ulapply Source code
update.dynamitefit Man page Source code
update_ Source code
verify_lag Source code
warning_ Source code
which_deterministic Source code
which_random Source code
which_stochastic Source code
dynamite documentation built on April 12, 2025, 1:18 a.m.

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