| add.diallel.vars | add.diallel.vars |
| adiag1 | Binds arrays corner-to-corner |
| A.matr | Additive relationship matrix |
| atcg1234 | Letter to number converter |
| atcg1234BackTransform | Letter to number converter |
| bathy.colors | Generate a sequence of colors for plotting bathymetric data. |
| bbasis | Function for creating B-spline basis functions (Eilers &... |
| build.HMM | Build a hybrid marker matrix using parental genotypes from... |
| DT_augment | DT_augment design example. |
| DT_big | Big GxE Quantitative Genetic Simulation |
| DT_btdata | Blue Tit Data for a Quantitative Genetic Experiment |
| DT_cornhybrids | Corn crosses and markers |
| DT_cpdata | Genotypic and Phenotypic data for a CP population |
| DT_envs | Simulated phenotypic records for a set of 100 environments... |
| DT_example | Broad sense heritability calculation. |
| DT_expdesigns | Data for different experimental designs |
| DT_fulldiallel | Full diallel data for corn hybrids |
| DT_gryphon | Gryphon data from the Journal of Animal Ecology |
| DT_h2 | Broad sense heritability calculation. |
| DT_halfdiallel | half diallel data for corn hybrids |
| DT_ige | Data to fit indirect genetic effects. |
| DT_legendre | Simulated data for random regression |
| DT_mohring | Full diallel data for corn hybrids |
| DT_polyploid | Genotypic and Phenotypic data for a potato polyploid... |
| DT_rice | Rice lines dataset |
| DT_sleepstudy | Reaction times in a sleep deprivation study |
| DT_technow | Genotypic and Phenotypic data from single cross hybrids... |
| DT_wheat | wheat lines dataset |
| DT_yatesoats | Yield of oats in a split-block experiment |
| enhancer-package | Mixed Effect Model Enhancing Functions |
| I.matr | Identity relationship matrix |
| impute | Imputing a numeric or character vector |
| jet.colors | Generate a sequence of colors alog the jet colormap. |
| LD.decay | Calculation of linkage disequilibrium decay |
| leg | Legendre polynomial matrix |
| logspace | Decreasing logarithmic trend |
| manhattan | Creating a manhattan plot |
| map.plot | Creating a genetic map plot |
| neMarker | Effective population size based on marker matrix |
| overlay | Overlay Matrix |
| propMissing | Proportion of missing data |
| redmm | Reduced Model Matrix |
| replaceValues | Replace the values of a vector |
| rrm | reduced rank matrix |
| simage | Image of sparsity between two variables |
| simage2 | Shortcut to sparse matrix image |
| simGECorMat | Create a GE correlation matrix for simulation purposes. |
| stan | Standardize a vector of values in range 0 to 1 |
| tps | Get Tensor Product Spline Mixed Model Incidence Matrices |
| transp | Creating color with transparency |
| wald | Wald Test for Model Coefficients |
