barabasiAlbert | Function to generate a Barabasi-Albert network |
black | Black's measles seroprevalence data. |
burnett | Burnett's Parasitoid-Host data. |
ccs | UK measles CCS data. |
chabaudi | Daily measures of malaria infected mice. |
cholera | Dacca cholera death data. |
coyne | Edition 1 Gradient-function for Coyne et al's rabies model |
coyne2 | Edition 2 Gradient-function for Coyne et al's rabies model |
cspring | Colorado Springs network |
dalziel | Measles incidence across 40 US cities |
ebola | Sierra-Leone Ebola 2015 data. |
euthamia | Euthamia graminifolia rust data. |
ferrari | Ferrari et al. 2005 outbreak data. |
filipendula | Filipendula rust data. |
fiv | FIV infection in cats. |
flu | Boarding school influenza data. |
gillespie | Gillespie exact algorithm |
gonnet | De et al. 2004 gonorrhea contact matrix |
gravity | A function to calculate the matrix of gravity coupling based... |
gypsymoth | Defoliated by gypsy moth each in northeast US 1975-2002. |
icelandflu | Monthly incidence of influenza-like illness in Iceland... |
integrandpc | Auxiliary function used by llik.pc |
jacobian | A Jacobian matrix calculator |
leslie | A function to calculate asymptotic growth, sensitivity and... |
litter | Bordetella bronchiseptica in rabbit kittens. |
llik.cb | Negative log-likelihood function for the chain-binomial model |
llik.pc | Function to estimate parameters for the piecewise-constant... |
m4494 | Measles in England and Wales 1944-1994. |
magono | Massachusetts gonorrhea data. |
may.app | Launch a shiny-app simulating May's Parasitoid-host Model... |
meas | Bi-weekly measles incidence in London from 1944-65. |
nbmod | The Nicholson-Bailey model |
nbspat.app | Launch a shiny-app simulating the spatially-extended... |
nextgenR0 | Next generation matrix R0 calculator |
niamey | Weekly measles incidence from 2003-04 in Niamey, Niger. |
niamey_daily | Day of appearance of each measles case from 2003-04 outbreak... |
orv.app | Launch a shiny-app to study outbreak-response vaccination... |
pagiard | Weekly incidence of giardia in Pennsylvania between 2006 and... |
paili | Weekly deaths from Influenza-like illness in Pennsylvania... |
palymes | Weekly incidence of Lymes disease in Pennsylvania between... |
pameasle | Weekly incidence of measles in Pennsylvania between 1928 and... |
pdv | Cumulative death count of harbor seals from CDV. |
pertcop | Weekly whooping cough incidence from 1900-1937 in Copenhagen,... |
peru | Rubella in Peru data. |
plot.cm | Function to plot an object of class CM |
plot.netSir | Function to plot a netSir object |
polymod | POLYMOD contact-rate data by Age. |
r0fun | Function to calculate R0 from a contact matrix |
rabbit | Rabbit _Bordetella bronchiseptica_ data. |
rabies | Raccoon rabies data. |
retrospec | Function to predict efficacy of outbreak-response vaccination... |
ringlattice | Function to generate a ring lattice |
ross.app | Launch a shiny-app simulating a Ross-Macdonald model |
seir.app | Launch a shiny-app simulating the seasonal SEIR model |
seirmod | Gradient-function for the SEIR model |
seirmod2 | Gradient-function for the forced SEIR model |
seirs.app | Launch a shiny-app simulating the SEIRS model |
silene | Antler smut on wild campion. |
sim.cb | Function to simulate the chain-binomial model |
sirAgemod | Gradient-function for the age-structured SIR model with... |
sir.app | Launch a shiny-app simulating the SIR model |
sirChainmod | Gradient-function for the chain-SIR model |
sirmod | Gradient-function for the SIR model |
sirNetmod | Function to simulate an epidemic on a network |
sirSpatmod | Gradient function for a spatially-extended SIR model |
sirvmod | Gradient-function for the SIR model with outbreak-response... |
sirwmod | Gradient-function for the SIRWS model |
summary.cm | Function to calculate the degree distribution for an object... |
summary.netSir | Function to summarize a netSir object |
tau | Gillespie tau-leap algorithm |
tsir.app | Launch a shiny-app simulating TSIR model |
tsirLlyap | Function to calculate the local Lyapunov exponents for the... |
tsirLyap | Function to do Lyapunov exponent calculations from a TSIR... |
tsirSim | Function to simulate the stochastic TSIR |
tsirSim2 | Function to simulate the seasonally-forced TSIR |
tsirSpat | Function to simulate the spatially-extended seasonally-forced... |
twostrain | Gradient-function for the two-strain SIR model |
twostrain.app | Launch a shiny-app simulating a two-strain SIR model |
tydiphtheria | Weekly incidence of diphtheria in Philadelphia between 1914... |
tymeasles | Weekly incidence of measles in Philadelphia between 1914 and... |
tyscarlet | Weekly incidence of scarlet fever in Philadelphia between... |
tywhooping | Weekly incidence of whooping cough in Philadelphia between... |
us | 2005 US Life table. |
usflu | US 1975/76 ILI data. |
variants | US SARS-CoV-2 variant data. |
waller | Rabies month of first appearance across Connecticut. |
wattsStrogatz | Function to generate a Watts-Strogatz network |
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