Man pages for epiparameter
Classes and Helper Functions for Working with Epidemiological Parameters
| aggregate.multi_epiparameter | Aggregate multiple <epiparameter> objects into a single... |
| as.data.frame.epiparameter | 'as.data.frame()' method for <epiparameter> class |
| as.data.frame.multi_epiparameter | 'as.data.frame()' method for <multi_epiparameter> class |
| as_epiparameter | Convert to an <epiparameter> object |
| as_epiparameter.data.frame | Convert <data.frame> to an <epiparameter> object |
| as.function.epiparameter | 'as.function()' method for <epiparameter> class |
| assert_epiparameter | Assert an object is a valid <epiparameter> object |
| calc_disc_dist_quantile | Calculate the quantiles of a probability distribution based... |
| c.epiparameter | 'c()' method for <epiparameter> class |
| convert_params_to_summary_stats | Convert the parameter(s) of a distribution to summary... |
| convert_summary_stats_to_params | Convert the summary statistics of a distribution to... |
| create_citation | Create a citation for an <epiparameter> object |
| create_metadata | Specify metadata associated with data set |
| create_method_assess | Specify methodological aspects of distribution fitting |
| create_prob_distribution | Create a distribution object |
| create_region | Specify the geography of the data entry |
| create_summary_stats | Specify reported summary statistics |
| create_uncertainty | Specify distribution parameter uncertainty |
| discretise | Discretises a continuous distribution in an <epiparameter>... |
| dot-calc_dist_params | Calculate the parameters of a probability distribution from a... |
| dot-check_optim_conv | Check whether the optimisation of distribution parameters has... |
| dot-citet | Format short citation from <bibentry> object |
| dot-clean_params | Standardise distribution parameters |
| dot-clean_string | Standardise the variables input by users |
| dot-clean_uncertainty | Standardise distribution parameter uncertainty |
| dot-convert_params_gamma | Convert parameters of the gamma distribution to summary... |
| dot-convert_params_geom | Convert parameter of the geometric distribution to summary... |
| dot-convert_params_lnorm | Converts the parameters of the lognormal distribution to... |
| dot-convert_params_nbinom | Convert parameters of the negative binomial distribution to... |
| dot-convert_params_weibull | Convert parameters of the Weibull distribution to summary... |
| dot-convert_summary_stats_gamma | Convert summary statistics to parameters of the gamma... |
| dot-convert_summary_stats_geom | Convert summary statistics to parameters of the geometric... |
| dot-convert_summary_stats_lnorm | Convert summary statistics to parameters of the lognormal... |
| dot-convert_summary_stats_nbinom | Convert summary statistics to parameters of the negative... |
| dot-convert_summary_stats_weibull | Convert summary statistics to parameters of the Weibull... |
| dot-distributional_family | Get the underlying distributions names from a <distribution>... |
| dot-epiparameter_df_to_epiparameter | Convert <data.frame> from 'as.data.frame.epiparameter()' to... |
| dot-extract_param | Optimises the parameters for a specified probability... |
| dot-get_percentiles | Convert a vector of named percentiles into correct format and... |
| dot-get_sym_percentiles | Get the lower and upper percentiles with a preference for... |
| dot-is_epireview | Check if <data.frame> input is from 'epireview' |
| epidist_db | Create <epiparameter> object(s) directly from the... |
| epiparameter | Create an <epiparameter> object |
| epiparameter_db | Create <epiparameter> object(s) directly from the... |
| epiparameter_distribution_functions | PDF, CDF, PMF, quantiles and random number generation for... |
| epiparameter_options | Package options |
| epiparameter-package | epiparameter: Classes and Helper Functions for Working with... |
| epireview_core_cols | A vector of 'character' strings with the core column names of... |
| extraction_functions | Function for extracting distribution parameters |
| extract_param | Calculate the parameters of a parametric probability... |
| family.epiparameter | Family method for the <epiparameter> class |
| format.epiparameter | Format method for <epiparameter> class |
| get_citation | Get citation from an object |
| get_citation.epiparameter | Get citation from an <epiparameter> object |
| get_citation.multi_epiparameter | Get citation from a list of <epiparameter> objects |
| get_parameters | Get parameters from an object |
| get_parameters.epiparameter | Get parameters from an <epiparameter> object |
| is_continuous | Check if distribution in <epiparameter> is continuous |
| is_epiparameter | Check object is an <epiparameter> |
| is_epiparameter_df | Check if <data.frame> input is from... |
| is_epiparameter_params | Check whether the vector of parameters for the probability... |
| is_parameterised | Check if <epiparameter> or list of <epiparameter> objects... |
| is_truncated | Check if distribution in <epiparameter> is truncated |
| lines.epiparameter | 'lines()' method for <epiparameter> class |
| mean.epiparameter | Mean method for <epiparameter> class |
| new_epiparameter | Constructor for <epiparameter> class |
| parameter_tbl | Table of epidemiological distributions |
| plot.epiparameter | Plot method for <epiparameter> class |
| plot.multi_epiparameter | 'plot()' method for <multi_epiparameter> class |
| print.epiparameter | Print method for <epiparameter> class |
| print.multi_epiparameter | Print method for <multi_epiparameter> class |
| reexports | Objects exported from other packages |
| test_epiparameter | Test whether an object is a valid <epiparameter> object |
