Man pages for evolved
Open Software for Teaching Evolutionary Biology at Multiple Scales Through Virtual Inquiries
| birds_spp | Birds species list |
| calcFossilDivTT | Calculate paleo diversity curves through different methods |
| checkAndFixUltrametric | Find and fix small rounding errors in ultrametric trees |
| countSeqDiffs | Counting protein sequence differences |
| cytOxidase | Cytochrome Oxidase sequences |
| data_whales | Whale body size and speciation rates |
| dinos_fossil | Occurrence of dinosaur fossils |
| estimateSpeciation | Estimate speciation assuming a pure-birth process |
| fitCRBD | Fit a constant-rate birth-death process to a phylogeny |
| lttPlot | Make a lineage through time (LTT) plot |
| NatSelSim | Simulating natural selection through time in a bi-allelic... |
| OneGenHWSim | Simulating one generation of genotypes under Hardy-Weinberg... |
| plotNatSel | Plot NatSelSim output |
| plotPaintedWhales | Plotting the whale phylogeny and coloring its clades |
| plotProteinSeq | Plot protein sequence(s) |
| plotRawFossilOccs | Plot a literal interpretation of a fossil record |
| plotWFDrift | Plot WFDriftSim output |
| ProteinSeq | Details, generics, and methods for the 'ProteinSeq' class |
| simulateBirthDeathRich | Simulating richness through birth-death processes |
| simulateTree | Simulating a phylogenetic trees through the birth-death... |
| timeseries_fossil | Fossil Time series |
| WFDriftSim | Simulating generations of genetic drift in a Wright–Fisher... |
| whale_phylo | Whale Phylogeny |
