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exDE: Extensible Differential Equations for Mosquito-Borne Pathogen Modeling
Provides tools to set up modular ordinary and delay differential equation models for mosquito-borne pathogens, focusing on malaria. Modular design is achieved by S3 dispatch on parameter lists for each component which is used to compute the full set of differential equations which may be solved using any of the packages for numerical simulation of differential equations in R. The methods implemented by this package are described in Wu et al. (2022) <doi:10.1101/2022.11.07.22282044>.
Getting started
README.md
5-3-4 Example
Basic Competition Aquatic Mosquito Model
Contributing
Hybrid MoI (Multiplicity of Infection) Human Model
ITN-based Vector Control
Ross-Macdonald Adult Mosquito Model
SIP (Susceptible-Infected-Prophylaxis) Human Model
SIS (Susceptible-Infected-Susceptible) Human Model
Spatial Metrics
Trace (exogenously forced) Aquatic Mosquito Model
Browse package contents
Package details |
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| Author | Sean L. Wu [aut, cre] (<https://orcid.org/0000-0002-5781-9493>), David L. Smith [aut] (<https://orcid.org/0000-0003-4367-3849>) |
| Maintainer | Sean L. Wu <slwood89@gmail.com> |
| License | MIT + file LICENSE |
| Version | 1.0.0 |
| URL | https://dd-harp.github.io/exDE/ |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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