Man pages for exDE
Extensible Differential Equations for Mosquito-Borne Pathogen Modeling
| approx_equal | Check if two numeric values are approximately equal |
| diag_inverse | Invert a diagonal matrix |
| dLdt | Derivatives for aquatic stage mosquitoes |
| dLdt.basic | Derivatives for aquatic stage mosquitoes |
| dLdt.trace | Derivatives for aquatic stage mosquitoes |
| dMYZdt | Derivatives for adult mosquitoes |
| dMYZdt.RM_dde | Derivatives for adult mosquitoes |
| dMYZdt.RM_ode | Derivatives for adult mosquitoes |
| dXdt | Derivatives for human population |
| dXdt.hMoI | Derivatives for human population |
| dXdt.SIP | Derivatives for human population |
| dXdt.SIS | Derivatives for human population |
| ExogenousForcing | Modify parameters due to exogenous forcing |
| ExogenousForcing.null | Modify parameters due to exogenous forcing |
| F_alpha | Number of newly emerging adults from each larval habitat |
| F_alpha.basic | Number of newly emerging adults from each larval habitat |
| F_alpha.trace | Number of newly emerging adults from each larval habitat |
| F_beta | Biting distribution matrix |
| F_beta.hMoI | Biting distribution matrix |
| F_beta_lag | Lagged biting distribution matrix |
| F_beta_lag.hMoI | Lagged biting distribution matrix |
| F_beta_lag.SIP | Lagged biting distribution matrix |
| F_beta_lag.SIS | Lagged biting distribution matrix |
| F_beta.SIP | Biting distribution matrix |
| F_beta.SIS | Biting distribution matrix |
| F_eggs | Number of eggs laid by adult mosquitoes |
| F_eggs.RM | Number of eggs laid by adult mosquitoes |
| F_EIR | Entomological inoculation rate on human strata |
| F_EIR.hMoI | Entomological inoculation rate on human strata |
| F_EIR.SIP | Entomological inoculation rate on human strata |
| F_EIR.SIS | Entomological inoculation rate on human strata |
| F_kappa | Net infectiousness of human population to mosquitoes |
| F_kappa.RM_dde | Net infectiousness of human population to mosquitoes |
| F_kappa.RM_ode | Net infectiousness of human population to mosquitoes |
| F_tau | Time spent host seeking/feeding and resting/ovipositing |
| F_tau.RM | Time spent host seeking/feeding and resting/ovipositing |
| F_x | Size of effective infectious human population |
| F_x.hMoI | Size of effective infectious human population |
| F_x_lag | Size of lagged effective infectious human population |
| F_x_lag.hMoI | Size of lagged effective infectious human population |
| F_x_lag.SIP | Size of lagged effective infectious human population |
| F_x_lag.SIS | Size of lagged effective infectious human population |
| F_x.SIP | Size of effective infectious human population |
| F_x.SIS | Size of effective infectious human population |
| F_Z | Density of infectious mosquitoes |
| F_Z_lag | Density of lagged infectious mosquitoes |
| F_Z_lag.RM | Density of lagged infectious mosquitoes |
| F_Z.RM | Density of infectious mosquitoes |
| make_index_L | Add indices for aquatic stage mosquitoes to parameter list |
| make_index_L.basic | Add indices for aquatic stage mosquitoes to parameter list |
| make_index_L.trace | Add indices for aquatic stage mosquitoes to parameter list |
| make_index_MYZ | Add indices for adult mosquitoes to parameter list |
| make_index_MYZ.RM | Add indices for adult mosquitoes to parameter list |
| make_index_X | Add indices for human population to parameter list |
| make_index_X.hMoI | Add indices for human population to parameter list |
| make_index_X.SIP | Add indices for human population to parameter list |
| make_index_X.SIS | Add indices for human population to parameter list |
| make_indices | Set indices for generalized spatial model |
| make_Omega | Make the mosquito demography matrix |
| make_parameters_exogenous_null | Make parameters for the null model of exogenous forcing (do... |
| make_parameters_L_basic | Make parameters for basic competition aquatic mosquito model |
| make_parameters_L_trace | Make parameters for trace aquatic mosquito model |
| make_parameters_MYZ_RM_dde | Make parameters for generalized RM DDE adult mosquito model |
| make_parameters_MYZ_RM_ode | Make parameters for generalized RM ODE adult mosquito model |
| make_parameters_vc_lemenach | Make parameters for Le Menach ITN model of vector control |
| make_parameters_vc_null | Make parameters for the null model of vector control (do... |
| make_parameters_X_hMoI | Make parameters for hybrid MoI human model |
| make_parameters_X_SIP | Make parameters for SIP human model |
| make_parameters_X_SIS | Make parameters for SIS human model |
| metric_calD | Parasite dispersal by humans |
| metric_calR | Parasite Dispersal through one Parasite Generation (Humans) |
| metric_calV | Parasite dispersal by mosquitoes |
| metric_calZ | Parasite Dispersal through one Parasite Generation... |
| MosquitoBehavior | Compute bloodfeeding and mortality rates |
| MosquitoBehavior.RM | Compute bloodfeeding and mortality rates |
| VectorControl | Modify baseline values due to vector control |
| VectorControl.lemenach | Modify baseline values due to vector control |
| VectorControl.null | Modify baseline values due to vector control |
| xDE_diffeqn | Generalized spatial differential equation model |
| xDE_diffeqn_mosy | Generalized spatial differential equation model (mosquito... |
