| add_error_to_motif | Add Additive Error to Motif |
| add_motif | Add Motif to Base Curve |
| cluster_candidate_motifs | Cluster Candidate Motifs |
| cluster_candidate_motifs_plot | cluster_candidate_motifs_plot |
| compare_nodes | Compare Nodes |
| discoverMotifs | Functional Motif Discovery |
| dot-check_fits | Check Fits |
| dot-diss_d0_d1_L2 | Dissimilarity Index for Multidimensional Curves |
| dot-domain | Domain Length Calculation for Curves |
| dot-find_min_diss | Find Minimum Dissimilarity |
| dot-find_occurrences | Find Occurrences of a Motif |
| dot-generate_coefficients | Generate Coefficients |
| dot-mapply_custom | Custom mapply Function for Parallel Processing |
| dot-resample | Resample Vector |
| dot-select_domain | .select_domain |
| dot-transform_list | Transform List Structure |
| dot-transform_to_matrix | Transform to Matrix |
| filter_candidate_motifs | Filter Candidate Motifs |
| find_recommended_path | Find Recommended Path in a Tree Structure |
| funMoDisco-package | funMoDisco: Motif Discovery in Functional Data |
| generate_background_curve | Generate Background Curve |
| generateCurves | Generate Functional Curves with Embedded Motifs |
| generateCurves-motifSimulation-method | Generate Functional Curves with Embedded Motifs |
| generate_curve_vector | Generate Curve Vector from FD Object |
| get_accolites | Get Accolites for a Given Leaf Label |
| get_minidend | Generate Minimum Dendrogram from Hierarchical Clustering |
| get_parents | Get Parent Nodes from a Given Node |
| get_path_complete | Get Complete Paths from a Dendrogram |
| initialChecks | Initial Checks for ProbKMA |
| motifSimulationApp | motifSimulationApp: A Shiny-Based GUI for Motif Simulation |
| motifSimulationBuilder | Create motifSimulation Object |
| motifSimulation-class | motifSimulationS4Class |
| motifs_search | Motif Search in Curves |
| motifs_search_plot | Plot Motif Search Results |
| padding | Pad a Matrix to a Specified Number of Rows |
| plot_motifs | Plot Embedded Motifs in Functional Curves |
| plot_motifs-motifSimulation-method | Plot Embedded Motifs in Functional Curves |
| ProbKMA | ProbKMA Class |
| probKMA_plot | Plot the Results of probKMA |
| probKMA_silhouette_filter | Filter Motifs from probKMA Results Based on Silhouette and... |
| probKMA_silhouette_plot | Plot Silhouette Index from probKMA Results |
| probKMA_wrap | Wrapper for the Probabilistic K-means Algorithm (ProbKMA) |
| recommend_node | Recommend Node from a Numeric Vector |
| simulated200 | Simulated data for local clustering |
| simulatedHighDimensional | High Dimensional simulated data for local clustering |
| to_motifDiscovery | to_motifDiscovery |
| to_motifDiscovery-list-method | to_motifDiscovery |
