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funkycells: Functional Data Analysis for Multiplexed Cell Images
Compare variables of interest between (potentially large numbers of) spatial interactions and meta-variables. Spatial variables are summarized using K, or other, functions, and projected for use in a modified random forest model. The model allows comparison of functional and non-functional variables to each other and to noise, giving statistical significance to the results. Included are preparation, modeling, and interpreting tools along with example datasets, as described in VanderDoes et al., (2023) <doi:10.1101/2023.07.18.549619>.
Getting started
Browse package contents
Package details |
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| Author | Jeremy VanderDoes [aut, cre, cph] (<https://orcid.org/0009-0001-9885-3073>), Jack Hywood [aut] (<https://orcid.org/0000-0002-2028-2629>), Gregory Rice [aut] |
| Maintainer | Jeremy VanderDoes <jeremy.vanderdoes@gmail.com> |
| License | GPL (>= 3) |
| Version | 1.1.1 |
| URL | https://github.com/jrvanderdoes/funkycells https://jrvanderdoes.github.io/funkycells/ |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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