Man pages for ggcorrheatmap
Make Flexible 'ggplot2' Correlation Heatmaps
| add_annotation | Add annotations to ggplot heatmap |
| add_dendrogram | Add dendrogram to ggplot object. |
| add_diag_names | Add diagonal names to heatmap. |
| add_mixed_layout | Add a layout column to long format data for mixed layouts. |
| apply_dendextend | Successively apply dendextend functions to a dendrogram. |
| check_annot_df | Check names of annotation |
| check_annot_names_deprecated | Check annotation name parameters for deprecated usage. |
| check_cell_labels | Check cell labels if they are ok. |
| check_dendrogram_pos | Check that dendrograms are positioned correctly |
| check_layout | Check that layout and mode are correct |
| check_logical | Check (supposed) logical values. |
| check_numeric | Check input numeric arguments for class and length. |
| cluster_data | Cluster data using hierarchical clustering or use provided... |
| cor_long | Make a correlation matrix from long format data. |
| default_col_scale | Get default colour scale for non-correlation heatmaps. |
| default_col_scale_corr | Get a default colour scale for correlation heatmaps. |
| default_size_scale | Get default size scale for non-correlation heatmaps. |
| default_size_scale_corr | Get a default size scale for correlation heatmaps. |
| extract_scales | Pick out relevant scales and format for mixed layout. |
| get_annotation_pos | Calculate positions of annotations for heatmap. |
| get_colour_scale | Get a Brewer or Viridis colour scale. |
| get_default_annot_scale | Colour scale dispenser. |
| ggcorrheatmap-package | ggcorrheatmap: Make Flexible 'ggplot2' Correlation Heatmaps |
| ggcorrhm | Make a correlation heatmap with ggplot2. |
| ggcorrhm_tidy | 'ggcorrhm()' for long format data. |
| gghm | Make a heatmap with ggplot2. |
| gghm_tidy | 'gghm()' for long format data. |
| increment1to8 | Increment between 1 and 8. |
| layout_hm | Layout heatmap data for plotting |
| make_facet_vector | Make vector for facetting |
| make_heatmap | Make main heatmap part of plot for gghm. |
| make_legend_order | Make legend order depending on what the plot will contain. |
| move_dendrogram | Move coordinates of dendrogram to edges of heatmap |
| orient_dendrogram | Orient a dendrogram. |
| prepare_annotation | Prepare annotation parameters and positions |
| prepare_cell_labels | Prepare cell labels in ggcorrhm to pass to gghm |
| prepare_dendrogram | Prepare dendrogram by transforming dendrogram segments. |
| prepare_facets | Prepare facetting columns in the plotting data. |
| prepare_facets_tidy | Prepare facets for gghm_tidy |
| prepare_mixed_param | Prepare parameters for mixed layouts. |
| prepare_scales | Prepare scales for heatmap. |
| prepare_scales_annot | Prepare default colour scales for annotation. |
| process_dendrogram | Process dendrogram with customisation options |
| remove_duplicate_scales | Remove duplicate scales. |
| remove_triangle | Remove triangle from symmetric matrix and return long format... |
| replace_default | Replace default elements in a named list with corresponding... |
| scale_dendrogram | Scale height of dendrogram. |
| scale_mat | Scale data rows or columns. |
| shape_mat_long | Convert a matrix to long format using row names and column... |
| shape_mat_wide | Convert long format matrix to wide. |
| test_cor | Calculate correlations and p-values between columns. |
