Man pages for holobiont
Microbiome Analysis Tools
| basic_branch | Branch-based Core Community Phylogeny Using Thresholds |
| basic_np | Non-phylogenetic Core Community Phylogeny Using Thresholds |
| basic_tip | Tip-based Core Community Phylogeny Using Thresholds |
| coreEdges | Edges of the Tree Included in the Core Community Phylogeny |
| coreFaithsPD | Faiths PD of the Core Microbiome |
| coreJaccard | Jaccard Distance Between Core Microbiomes from Two Habitats |
| corePhyloVenn | Phylogenetic Venn Diagram Comparing Core Microbiomes from... |
| coreRichness | Richness of the Core Microbiome |
| coreTaxa | Taxa Included in the Core Microbiome |
| coreTree | The Core Community Phylogeny |
| coreUniFrac | UniFrac Distance Between Core Microbiomes from Two Habitats |
| coreVenn | Venn Diagram Comparing (Non-Phylogenetic) Core Microbiomes... |
| coreVennTree | Phylogeny with Branches Colored Based on Venn Diagram |
| ggvenn2 | A modified version of functions from the ggvenn package for... |
| shade_branch | Branch-based Core Community Phylogeny Using the Shade &... |
| shade_np | Non-phylogenetic Core Community Using the Shade & Stopnisek... |
| shade_tip | Tip-based Core Community Phylogeny Using the Shade &... |
