API for karyotapR
DNA Copy Number Analysis for Genome-Wide Tapestri Panels
| Global functions | |
|---|---|
| .ComplexHeatmap.default | Source code |
| .FactorNumericalOrder | Source code |
| .GetCytobands.df | Source code |
| .GetPanelID | Source code |
| .LibSizeNorm | Source code |
| .MBNormCounts | Source code |
| .SelectAssay | Source code |
| .TapestriExperiment | Man page |
| .calcClassPosteriors | Source code |
| .callCopyNumberClasses | Source code |
| .createTapestriExperiment.manual | Source code |
| .createTapestriExperiment.sim | Source code |
| .fitGaussianDistributions | Source code |
| .generateSimulatedCNVCells | Source code |
| .getSingleBoundary | Source code |
| .singleModelBoundary | Source code |
| .smoothSimulatedCells | Source code |
| Custom Slot Getters and Setters | Man page |
| PCAKneePlot | Man page Source code |
| TapestriExperiment-class | Man page |
| assayBoxPlot | Man page Source code |
| assayHeatmap | Man page Source code |
| barcodeProbe | Man page |
| barcodeProbe,TapestriExperiment-method | Man page |
| barcodeProbe<- | Man page |
| barcodeProbe<-,TapestriExperiment-method | Man page |
| calcCopyNumber | Man page Source code |
| calcGMMCopyNumber | Man page Source code |
| calcNormCounts | Man page Source code |
| calcSmoothCopyNumber | Man page Source code |
| callSampleLables | Man page Source code |
| corner | Man page Source code |
| countBarcodedReads | Man page Source code |
| countBarcodedReadsFromContig | Man page Source code |
| createTapestriExperiment | Man page Source code |
| generateControlCopyNumberTemplate | Man page Source code |
| getChrOrder | Man page Source code |
| getCytobands | Man page Source code |
| getGMMBoundaries | Man page Source code |
| getTidyData | Man page Source code |
| gmmParams | Man page |
| gmmParams,TapestriExperiment-method | Man page |
| grnaProbe | Man page |
| grnaProbe,TapestriExperiment-method | Man page |
| grnaProbe<- | Man page |
| grnaProbe<-,TapestriExperiment-method | Man page |
| karyotapR | Man page |
| karyotapR-package | Man page |
| moveNonGenomeProbes | Man page Source code |
| newDummyTapestriExperiment | Source code |
| newTapestriExperimentExample | Man page Source code |
| plotCopyNumberGMM | Man page Source code |
| reducedDimPlot | Man page Source code |
| runClustering | Man page Source code |
| runPCA | Man page Source code |
| runUMAP | Man page Source code |
| show,TapestriExperiment-method | Man page |
| simpleLinePlot | Source code |
| simpleScatterPlot | Source code |
