Files in karyotapR

DNA Copy Number Analysis for Genome-Wide Tapestri Panels

NEWS.md README.md R/tapestriExperimentDefinition.R R/getCytobands.R R/karyotapR-package.R R/clustering.R R/copyNumberCalculation.R R/moveNonGenomeProbes.R R/helperFunctions.R R/normalization.R R/plots.R R/createTapestriExperiment.R R/getChrOrder.R R/GaussianMixtureCalls.R R/parseBarcodedReads.R tests/testthat.R tests/testthat/test-normalization.R man/runUMAP.Rd man/moveNonGenomeProbes.Rd man/createTapestriExperiment.Rd man/countBarcodedReads.Rd man/assayBoxPlot.Rd man/runPCA.Rd man/plotCopyNumberGMM.Rd man/calcCopyNumber.Rd man/calcSmoothCopyNumber.Rd man/callSampleLables.Rd man/karyotapR-package.Rd man/calcNormCounts.Rd man/calcGMMCopyNumber.Rd man/reducedDimPlot.Rd man/PCAKneePlot.Rd man/TapestriExperiment-class.Rd man/getChrOrder.Rd man/getGMMBoundaries.Rd man/getTidyData.Rd man/newTapestriExperimentExample.Rd man/runClustering.Rd man/getCytobands.Rd man/slotGettersSetters.Rd man/corner.Rd man/assayHeatmap.Rd