Man pages for locStra
Fast Implementation of (Local) Population Stratification Methods
| bed_fastCovEVs | Computation of the k leading eigenvectors of the covariance... |
| bed_fastGrmEVs | Computation of the k leading eigenvectors of the genomic... |
| bed_fastJaccardEVs | Computation of the k leading eigenvectors of the Jaccard... |
| bed_fastSMatrixEVs | Computation of the k leading eigenvectors of the s-matrix... |
| covMatrix | C++ implementation to compute the covariance matrix for a... |
| fastCovEVs | Computation of the k leading eigenvectors of the covariance... |
| fastGrmEVs | Computation of the k leading eigenvectors of the genomic... |
| fastJaccardEVs | Computation of the k leading eigenvectors of the Jaccard... |
| fastSMatrixEVs | Computation of the k leading eigenvectors of the s-matrix... |
| fullscan | A full scan of the input data 'm' using a collection of... |
| grMatrix | C++ implementation to compute the genomic relationship matrix... |
| jaccardMatrix | C++ implementation to compute the Jaccard similarity matrix... |
| makeWindows | Auxiliary function to generate a two-column matrix of windows... |
| powerMethod | C++ implementation of the power method (von Mises iteration)... |
| selectVariants | Auxiliary function to invert minor alleles and to select... |
| sMatrix | C++ implementation to compute the s-matrix (the weighted... |
| testdata-data | Simulated test data. |
