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locuszoomr: Gene Locus Plot with Gene Annotations
Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots <doi:10.1093/bioadv/vbaf006>.
Getting started
Browse package contents
Package details |
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| Author | Myles Lewis [aut, cre] (<https://orcid.org/0000-0001-9365-5345>) |
| Maintainer | Myles Lewis <myles.lewis@qmul.ac.uk> |
| License | GPL (>= 3) |
| Version | 0.3.8 |
| URL | https://github.com/myles-lewis/locuszoomr |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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Try the locuszoomr package in your browser
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