Man pages for mSigTools
Mutational Signature Analysis Tools
| find_best_reconstruction_QP | Find "best" reconstruction of a target signature or spectrum... |
| match_two_sig_sets | Find an optimal matching between two sets of signatures... |
| optimize_exposure_QP | Quadratic programming optimization of signature activities |
| plot_exposure | Plot exposures in multiple plots, with each plot showing... |
| plot_exposure_internal | Plot a matrix of exposures in a single plot. |
| plot_exposure_to_pdf | Plot exposures in multiple plots to a single PDF file, with... |
| read_exposure | Read an exposure matrix from a file. |
| sig_dist_matrix | Compute a matrix of distances / similarities between two sets... |
| sort_exposure | Sort columns of an exposure matrix based on the number of... |
| TP_FP_FN_avg_sim | Find best matches (by cosine similarity) of a set of... |
| write_exposure | Write an exposure matrix to a file. |
