Man pages for magmaR
R-Client for Interacting with the 'UCSF Data Library'

authentication-and-environmentsStarting out and working with different Etna environments
magmaRsetSet up your magma environment and authentication
querySearch-like function that can obtain linked data from...
retrieveDownload data from magma as a tsv, and convert to a...
retrieveJSONDownload data from magma as a json, and convert to a list
retrieveMatrixDownload data from magma that is stored as a matrix
retrieveMetadataDownload data from magma of one model, but transformed into...
retrieveProjectsHelper function that retrieves all the projectName options...
retrieve_SpecialCasesHelper functions that utilize special cases of magma...
updateFromDFEasier to use wrapper of 'updateValues'
updateMatrixA matrix-specific wrapper of 'updateValues'
updateValuesAnalogous to the '/update' function of magma
magmaR documentation built on June 8, 2025, 10 a.m.