API for makemyprior
Intuitive Construction of Joint Priors for Variance Parameters
| Global functions | |
|---|---|
| add_remove_AB | Source code |
| are_attached | Source code |
| are_detached | Source code |
| are_leaf_nodes | Source code |
| attach_action | Source code |
| attach_button | Source code |
| attach_nodes | Source code |
| calc_all_covariance_matrices | Source code |
| calc_jac_logdet | Source code |
| calc_prior_spline | Source code |
| calc_variance_proportions | Source code |
| calculate_KLD | Source code |
| calculate_pc_prior | Source code |
| can_be_attached | Source code |
| check_covariance_matrices | Source code |
| check_if_valid_input_make_prior | Source code |
| choose_prior_lpdf | Source code |
| chosen_dirichlet_guide | Source code |
| chosen_pc_finished | Source code |
| chosen_pc_guide | Source code |
| clicked_node_action | Source code |
| collect_split_info | Source code |
| compare_tree_strings | Source code |
| compile_stan | Man page Source code |
| compute_rank | Source code |
| concentration_pc_guide | Source code |
| create_stan_file | Man page Source code |
| cw_part_guide | Source code |
| cw_priors_lpdf | Source code |
| decompose_formula | Source code |
| default_pc_prior_param | Source code |
| default_totvar | Source code |
| default_tree | Source code |
| detach_action | Source code |
| detach_button | Source code |
| detach_node | Source code |
| df_prior_variance | Source code |
| df_prior_variance_custom | Source code |
| disable_everything | Source code |
| enable_merge | Source code |
| enable_remove | Source code |
| eval_joint_prior | Man page Source code |
| eval_pc_prior | Man page |
| eval_spline_lpdf | Source code |
| eval_spline_lpdf2 | Source code |
| eval_spline_prior | Source code |
| expit | Man page Source code |
| extract_posterior_effect | Man page |
| extract_posterior_parameter | Man page |
| find_leaf_nodes | Source code |
| find_node_level | Source code |
| find_pc_prior_param | Man page Source code |
| finishing_guide | Source code |
| first_gen_children | Source code |
| fix_size_covmat | Source code |
| getSplinePrior | Source code |
| get_basemodel_node_name | Source code |
| get_basemodel_value | Source code |
| get_children | Source code |
| get_detached_nodes | Source code |
| get_diri_param | Source code |
| get_dirichlet_parameter | Source code |
| get_indexes | Source code |
| get_indexes2 | Source code |
| get_leaf_node_ids_for_split | Source code |
| get_leaf_nodes | Source code |
| get_matrix_data_index | Source code |
| get_node_data_for_tree | Source code |
| get_node_id | Source code |
| get_node_model_name_click | Source code |
| get_node_name | Source code |
| get_node_name_click | Source code |
| get_node_name_id | Source code |
| get_node_strings | Source code |
| get_nodes_above | Source code |
| get_nodes_below | Source code |
| get_original_nodes | Source code |
| get_par1_default_val | Source code |
| get_par1_label | Source code |
| get_par2_default_val | Source code |
| get_par2_label | Source code |
| get_par2_max | Source code |
| get_par2_step | Source code |
| get_parameter_order | Man page Source code |
| get_parent_node_id | Source code |
| get_prior_expr | Source code |
| get_prior_expr_text | Source code |
| get_prior_info | Source code |
| get_prior_number | Source code |
| get_siblings | Source code |
| get_split_ids | Source code |
| get_split_ids_by_level | Source code |
| get_split_number | Source code |
| get_top_nodes | Source code |
| get_variance_prior_number | Source code |
| go_to_step_2_guide | Source code |
| hd_dirichlet_prior_lpdf | Source code |
| hd_pc_prior_lpdf | Source code |
| hd_prior_joint_lpdf | Source code |
| inference_inla | Man page Source code |
| inference_stan | Man page Source code |
| initialize_guide | Source code |
| initialize_nodes | Source code |
| is_dual_split_node | Source code |
| is_leaf_node | Source code |
| is_node_in_tree_string | Source code |
| is_split_node | Source code |
| is_top_node | Source code |
| jacobian_text | Source code |
| joint_prior | Source code |
| latin_data | Man page |
| logit | Man page Source code |
| main_file_text | Source code |
| make_basemodel_covmat | Source code |
| make_besag_prec_mat | Source code |
| make_covariance_matrices | Source code |
| make_covariance_matrix | Source code |
| make_edges | Source code |
| make_eval_prior_data | Man page Source code |
| make_graph | Source code |
| make_graph_guide | Source code |
| make_hd_prior_default | Source code |
| make_hd_prior_string | Source code |
| make_hd_prior_tree | Source code |
| make_inla_data_object | Source code |
| make_inla_formula | Source code |
| make_jpr | Source code |
| make_model_eq_latex | Source code |
| make_model_eq_rexpr | Source code |
| make_output | Source code |
| make_par1_box_guide | Source code |
| make_par2_box_guide | Source code |
| make_par_eq_latex | Source code |
| make_pr_dists_latex | Source code |
| make_prior | Man page Source code |
| make_r_script | Source code |
| make_rw1_mat | Source code |
| make_rw2_mat | Source code |
| make_split_list | Source code |
| make_stan_data_object | Source code |
| make_subtree | Source code |
| make_valid_V_prior | Source code |
| make_valid_cw_prior | Source code |
| make_valid_prior_object | Source code |
| make_valid_tree | Source code |
| make_valid_w_prior | Source code |
| make_var_eq_latex | Source code |
| makemyprior_example_model | Man page Source code |
| makemyprior_gui | Man page Source code |
| makemyprior_models | Man page Source code |
| makemyprior_options_latent | Source code |
| makemyprior_options_likelihood | Source code |
| makemyprior_options_prior | Source code |
| makemyprior_plotting | Man page Source code |
| max_pr_num | Source code |
| mc | Man page Source code |
| mc_required_input | Source code |
| median_pc_guide | Source code |
| merge_action | Source code |
| merge_button | Source code |
| merge_detached_nodes | Source code |
| merge_trees | Source code |
| model_to_number | Source code |
| neonatal_data | Man page |
| no_of_children | Source code |
| node_palette | Source code |
| nodes_in_tree | Source code |
| opening_guide | Source code |
| pc_dual_logit_stable | Source code |
| plot.mmp_inla | Man page Source code |
| plot.mmp_prior | Man page Source code |
| plot.mmp_stan | Man page Source code |
| plot_diri_w | Source code |
| plot_marginal_prior | Man page |
| plot_posterior_fixed | Man page |
| plot_posterior_precision | Man page |
| plot_posterior_stan | Man page |
| plot_posterior_stdev | Man page |
| plot_posterior_variance | Man page |
| plot_prior | Man page |
| plot_priors | Source code |
| plot_several_posterior_stan | Man page |
| plot_tree_structure | Man page |
| possible_models | Source code |
| print.mmp_inla | Man page Source code |
| print.mmp_prior | Man page Source code |
| print.mmp_stan | Man page Source code |
| print_prior_choice_fixef | Source code |
| print_prior_choice_ranef | Source code |
| prior_dists_text | Source code |
| prior_intrinsic_base | Source code |
| reduce_matrices | Source code |
| remove_action | Source code |
| remove_button | Source code |
| scale_cov_matrix | Source code |
| scale_precmat | Man page Source code |
| server | Source code |
| set_detached_edges | Source code |
| set_node_title | Source code |
| shorten_names | Source code |
| split_part_guide | Source code |
| starting_guide | Source code |
| stepwise_wV_guide | Source code |
| summary.mmp_inla | Man page Source code |
| summary.mmp_prior | Man page Source code |
| summary.mmp_stan | Man page Source code |
| text_latex_param | Source code |
| totvar_part_guide | Source code |
| transf_matrix | Source code |
| typical_variance | Man page Source code |
| update_V_prior_attach_detach | Source code |
| update_V_prior_merged_detached_nodes | Source code |
| update_V_prior_merged_trees | Source code |
| update_basemodel_edges | Source code |
| update_initial_args | Source code |
| update_node_labels | Source code |
| update_nodes_edges_merge | Source code |
| update_nodes_edges_remove | Source code |
| update_prior_w | Source code |
| update_prior_w_attach_detach | Source code |
| update_prior_w_merge_remove | Source code |
| update_var_prior | Source code |
| update_var_prior_params | Source code |
| update_variance_prior_attach_detach | Source code |
| wheat_data | Man page |
