Man pages for malariaAtlas
An R Interface to Open-Access Malaria Data, Hosted by the 'Malaria Atlas Project'

as.MAPrasterConvert Raster objects into MAPraster objects
as.MAPshpConvert SpatialPolygon objects into MAPshp objects
as.pr.pointsConvert data.frames to pr.points objects.
as.vectorpointsConvert data.frames to vector.points objects.
autoplot_MAPrasterQuickly visualise Rasters downloaded from MAP
autoplot.MAPrasterQuickly visualise Rasters downloaded from MAP
autoplot.MAPshpCreate a basic plot to visualise downloaded shapefiles
autoplot.pr.pointsCreate a basic plot showing locations of downloaded PR points
autoplot.sfCreate a basic plot to visualise downloaded shapefiles
autoplot.SpatRasterQuickly visualise Rasters downloaded from MAP
autoplot.SpatRasterCollectionQuickly visualise Rasters downloaded from MAP
autoplot.vector.pointsCreate a basic plot showing locations of downloaded Vector...
build_bbox_filterBuilds a filter to be used with getFeatures, that will filter...
build_cql_bbox_filterBuilds a CQL filter to be used with getFeatures, that will...
build_cql_filterBuilds a cql filter to be used with getFeatures, that will...
build_cql_time_filterBuilds a cql filter to be used with getFeatures, that will...
callGetFeaturesWithFiltersCalls getFeatures on the given type with the given filters,...
clean_mosquito_namesFunction to clean up a bunch of mess in the mosquito names.
combine_cql_filtersBuilds a cql filter from a list of cql sub filters
convertPrevalenceconvert prevalences from one age range to another
convert_to_date_with_trycatchTries to convert character into a Date object. If this fails,...
extractLayerValuesReturns a data.frame of the extracted raster values with...
extractRasterExtract pixel values from MAP rasters using point...
fetchCountriesGivenDatasetIdGet the list of available countries for a given dataset_id in...
fillDHSCoordinatesAdd DHS locations to malaria data
getLatestVersionForAdminDataGet the latest version of admin boundary data
getLatitudeColumnReturns the best latitude column name in df data.frame, if...
getLongitudeColumnReturns the best longitude column name in df data.frame, if...
getMinAndMaxYearGets the minimum and maximum year for the time dimension...
get_name_from_wfs_feature_type_idGet the name from a wfs feature type id.
getPRDownload PR points from the MAP database
getPropertiesForAdminLevelGets the property string to provide to getFeatures input...
getRasterDownload Rasters produced by the Malaria Atlas Project
getRasterDatasetIdFromSurfaceGets the rasters dataset id, given a surface (title). If more...
getShpDownload MAPadmin2013 Administrative Boundary Shapefiles from...
getSpBboxReturn sp style bbox
getVecOccDownload Vector Occurrence points from the MAP database...
get_wcs_client_from_raster_idGet the WCS client for a raster ID.
get_wcs_clientsWCS clients lazily created or from cache
get_wcs_coverage_summary_from_raster_idGet the WCS coverage summary for a raster ID.
get_wfs_clientsWFS clients lazily created or from cache
get_wms_clientsWMS clients lazily created or from cache
get_workspace_and_version_from_coverage_idGet the workspace and version from a raster id.
get_workspace_and_version_from_wfs_feature_type_idGet the workspace and version from a wfs feature type id.
isAvailableAvailable data to download from the MAP geoserver.
isAvailable_prCheck whether PR points are available for a given location
isAvailable_vecCheck whether Vector Occurrence points are available for a...
listDataDeprecated function. Please instead use listPRPointCountries...
listFeatureTypeDatasetsFromWorkspaceList all datasets from the Web Feature Services provided by...
listPointsDeprecated function. Please instead use listPRPointCountries...
listPRPointCountriesList countries where there is pr point data available
listPRPointVersionsList all dataset versions from the Web Feature Services...
listRasterList all MAP Rasters available to download.
listShpList administrative units for which shapefiles are stored on...
listShpVersionsList all versions of admin unit shapes from the Web Feature...
listSpecieslist all species which have occurrence data within the MAP...
listVecOccPointCountriesList countries where there is vector occurrence point data...
listVecOccPointVersionsList all dataset versions from the Web Feature Services...
makeSpatRasterAutoplotCreate a single (sub) plot for a SpatRaster
malariaAtlasAn R interface to open-access malaria data, hosted by the...
malariaAtlas documentation built on Oct. 27, 2023, 9:07 a.m.