API for metabodecon
Deconvolution and Alignment of 1d NMR Spectra
| Global functions | |
|---|---|
| .onLoad | Source code |
| MetaboDecon1D | Man page Source code |
| MetaboDecon1D_silent | Source code |
| MetaboDecon1D_silent_sim | Source code |
| `%!=%` | Source code |
| `%!==%` | Source code |
| `%&&%` | Source code |
| `%==%` | Source code |
| `%===%` | Source code |
| `%notin` | Source code |
| `%||%` | Source code |
| `[.collection` | Source code |
| aaa_Get_Started | Man page Source code |
| align | Man page Source code |
| all_identical | Source code |
| analyze_noise_methods | Source code |
| as_collection | Source code |
| as_decon0 | Man page Source code |
| as_decon1 | Man page Source code |
| as_decon1.decon0 | Source code |
| as_decon1.decon2 | Source code |
| as_decon1.idecon | Source code |
| as_decon2 | Man page Source code |
| as_decon2.decon1 | Source code |
| as_decon2.idecon | Source code |
| as_decon2.rdecon | Source code |
| as_decons0 | Man page Source code |
| as_decons1 | Man page Source code |
| as_decons2 | Man page Source code |
| as_idecon | Source code |
| as_idecons | Source code |
| as_ispec | Source code |
| as_ispecs | Source code |
| as_metabodecon_class | Man page |
| as_rdecon | Source code |
| as_rdecons | Source code |
| as_spectra | Man page Source code |
| as_spectrum | Man page Source code |
| as_v12_collection | Source code |
| as_v12_singlet | Source code |
| bioc_install | Source code |
| cache_example_datasets | Source code |
| cachedir | Source code |
| calc_A | Source code |
| calc_B | Source code |
| calc_lambda | Source code |
| calc_prarp | Source code |
| calc_prarpx | Source code |
| calc_second_derivative | Source code |
| calc_w | Source code |
| calc_y0 | Source code |
| calculate_lorentz_curves | Man page Source code |
| called_from_globalenv | Source code |
| capture.output2 | Source code |
| check_decon_params | Source code |
| check_mdrb | Man page Source code |
| check_mdrb_deps | Man page Source code |
| checksum | Source code |
| circles | Source code |
| clear | Source code |
| collapse | Source code |
| combine | Source code |
| combine_peaks | Man page Source code |
| combine_scores | Source code |
| compare_spectra | Source code |
| confirm_sfr | Source code |
| confirm_wshw | Source code |
| convert_pos | Man page Source code |
| convert_width | Man page Source code |
| count_stretches | Source code |
| datadir | Man page Source code |
| datadir_persistent | Man page Source code |
| datadir_temp | Man page Source code |
| deconvolute | Man page Source code |
| deconvolute_blood | Source code |
| deconvolute_spectra | Source code |
| deconvolute_spectrum | Source code |
| deconvolute_spectrum2 | Source code |
| deconvolution | Source code |
| document | Source code |
| dohCluster | Man page Source code |
| dohCluster_withMaxShift | Source code |
| dohCluster_withoutMaxShift | Source code |
| download_example_datasets | Man page Source code |
| download_example_datasets_zip | Source code |
| dput2 | Source code |
| draw_arrows | Source code |
| draw_axis | Source code |
| draw_box | Source code |
| draw_con_lines | Source code |
| draw_hline | Source code |
| draw_lc_line | Source code |
| draw_lc_rect | Source code |
| draw_legend | Source code |
| draw_line | Source code |
| draw_mtext | Source code |
| draw_nmr_spectrometer | Source code |
| draw_points | Source code |
| draw_rect | Source code |
| draw_spectrum | Man page Source code |
| draw_verts | Source code |
| draw_vial | Source code |
| du | Source code |
| empty_df | Source code |
| enrich_sfr | Source code |
| enrich_sfr2 | Source code |
| enrich_wshw | Source code |
| enrich_wshw2 | Source code |
| evalwith | Man page Source code |
| expect_file_size | Source code |
| expect_str | Source code |
| extract_example_datasets | Source code |
| figsize | Source code |
| fill_dev | Source code |
| filter_peaks | Source code |
| find_peaks | Source code |
| find_peaks2 | Source code Source code |
| fit_lorentz_curves | Source code Source code |
| gen_feat_mat | Man page Source code |
| generate_lorentz_curves | Man page Source code |
| generate_lorentz_curves_sim | Man page Source code |
| get_MetaboDecon1D_answers | Source code |
| get_adjno | Source code |
| get_args | Source code |
| get_data_dir | Man page Source code |
| get_datadir_mock | Source code |
| get_decon_params | Source code |
| get_default_names | Source code |
| get_draw_spectrum_defaults | Source code |
| get_foc_frac | Source code |
| get_foc_rgn | Source code |
| get_int_input | Source code |
| get_left_border | Source code |
| get_left_borders_fast | Source code |
| get_logv | Source code |
| get_mdrb_version | Source code |
| get_name | Source code |
| get_names | Source code |
| get_ndc | Source code |
| get_num_input | Source code |
| get_peak | Source code |
| get_peak_centers_fast | Source code |
| get_peak_indices | Source code |
| get_peak_score | Source code |
| get_peak_scores_fast | Source code |
| get_ppm_range | Man page Source code |
| get_readline_mock | Source code |
| get_right_border | Source code |
| get_right_borders_fast | Source code |
| get_sfr | Source code |
| get_si_mat | Man page Source code |
| get_sim_params | Source code |
| get_smopts | Source code |
| get_started | Man page |
| get_str_input | Source code |
| get_sub_fig_args | Source code |
| get_sup_mat | Source code |
| get_worker_logs | Source code |
| get_wshw | Source code |
| get_yn_input | Source code |
| grconvertH | Source code |
| grconvertW | Source code |
| human_readable | Source code |
| in_hz | Source code |
| init_dev | Source code |
| init_lc | Source code |
| init_lc2 | Source code |
| install_mdrb | Man page Source code |
| ipu_ratio | Source code |
| is_align | Man page Source code |
| is_aligns | Man page Source code |
| is_bool | Source code |
| is_bool_or_null | Source code |
| is_char | Source code |
| is_char_or_null | Source code |
| is_decon0 | Man page Source code |
| is_decon1 | Man page Source code |
| is_decon2 | Man page Source code |
| is_decon_list | Source code |
| is_decon_obj | Source code |
| is_decons0 | Man page Source code |
| is_decons1 | Man page Source code |
| is_decons2 | Man page Source code |
| is_equal | Source code |
| is_existing_dirpath | Source code |
| is_existing_path | Source code |
| is_float_str | Source code |
| is_idecon | Source code |
| is_idecons | Source code |
| is_int | Source code |
| is_int_or_null | Source code |
| is_int_str | Source code |
| is_ispec | Source code |
| is_ispecs | Source code |
| is_list_of_nums | Source code |
| is_metabodecon_class | Man page |
| is_num | Source code |
| is_num_or_null | Source code |
| is_rdecon | Source code |
| is_rdecons | Source code |
| is_spectra | Man page Source code |
| is_spectrum | Man page Source code |
| is_spectrum_or_spectra | Source code |
| is_str | Source code |
| is_str_or_null | Source code |
| load_all | Source code |
| loaded_via_devtools | Source code |
| local_fig | Source code |
| logf | Source code |
| lorentz | Source code |
| lorentz_int | Source code |
| lorentz_sup | Source code |
| make_sap | Source code |
| make_sim | Source code |
| make_spectrum | Man page Source code |
| marbox | Source code |
| mcmapply | Source code |
| metabodecon | Man page |
| metabodecon-package | Man page |
| metabodecon_file | Man page Source code |
| mf_filled_by_row | Source code |
| mkdat_sim2 | Source code |
| mkdirs | Source code |
| mkenv_draw_spectrum | Source code |
| mkenv_plot_spectrum | Source code |
| mkfig_nmr_challenges | Source code |
| mockdir | Source code |
| mse | Source code |
| mtext2 | Source code |
| ndc_to_usr | Source code |
| new_rdecon | Source code |
| norm_path | Source code |
| not_cran | Source code |
| npc_to_ndc | Source code |
| pairwise_identical | Source code |
| parse_metadata | Source code |
| pkg_file | Source code |
| plot_10_annotated_spectra | Source code |
| plot_1_nmr_experiment | Source code |
| plot_2_raw_fid | Source code |
| plot_2_raw_fids | Source code |
| plot_3_blackbox_preprocessing | Source code |
| plot_3_preprocessing | Source code |
| plot_4_raw_spectra | Source code |
| plot_4_raw_spectrum | Source code |
| plot_5_deconvolution | Source code |
| plot_5_deconvolutions | Source code |
| plot_6_deconvoluted_spectra | Source code |
| plot_6_deconvoluted_spectrum | Source code |
| plot_7_alignment | Source code |
| plot_7_alignments | Source code |
| plot_8_aligned_spectra | Source code |
| plot_8_aligned_spectrum | Source code |
| plot_9_annotation | Source code |
| plot_9_annotations | Source code |
| plot_align | Source code |
| plot_dummy | Source code |
| plot_empty | Source code |
| plot_lorentz_curves_save_as_png | Man page Source code |
| plot_nmr_challenges | Source code |
| plot_noise_methods | Source code |
| plot_prarp | Source code |
| plot_sfr | Source code |
| plot_si_mat | Source code |
| plot_sim_spec | Source code |
| plot_spectra | Man page Source code |
| plot_spectrum | Man page Source code |
| plot_spectrum_superposition_save_as_png | Man page Source code |
| plot_triplets | Man page Source code |
| plot_ws | Source code |
| pop | Source code |
| print.align | Man page Source code |
| print.aligns | Man page Source code |
| print.decon1 | Man page Source code |
| print.decon2 | Man page Source code |
| print.decons1 | Man page Source code |
| print.decons2 | Man page Source code |
| print.idecon | Source code |
| print.idecons | Source code |
| print.ispec | Source code |
| print.ispecs | Source code |
| print.rdecon | Source code |
| print.rdecons | Source code |
| print.spectra | Man page Source code |
| print.spectrum | Man page Source code |
| print_methods | Man page |
| r_geq | Source code |
| read_acqus | Source code |
| read_bruker | Source code |
| read_decon_params | Source code |
| read_decon_params_original | Source code |
| read_jcampdx | Source code |
| read_one_r | Source code |
| read_procs_file | Source code |
| read_simpar | Source code |
| read_spectra | Man page Source code |
| read_spectrum | Man page Source code |
| readline | Source code |
| refine_lc2 | Source code |
| refine_lc_v14 | Source code |
| rm_negative_signals | Source code |
| rm_negative_signals2 | Source code |
| rm_water_signal | Source code |
| rm_water_signal2 | Source code |
| rm_zero_width_peaks | Source code |
| run_tests | Source code |
| sap | Man page |
| save_spectra | Source code |
| save_spectrum | Source code |
| set | Source code |
| set_fig | Source code |
| set_names | Source code |
| sfr_in_ppm_bwc | Source code |
| sfr_in_sdp_bwc | Source code |
| sim | Man page |
| simulate_from_decon | Source code |
| simulate_spectrum | Man page Source code |
| skip_if_not_in_globenv | Source code |
| skip_if_slow_tests_disabled | Source code |
| skip_if_speaq_deps_missing | Source code |
| smooth_signals | Source code |
| smooth_signals2 | Source code |
| speaq_align | Man page Source code |
| speaq_align_original | Source code |
| store | Source code |
| store_as_rds | Source code |
| str0 | Source code |
| str2 | Source code |
| test_draw_spectrum | Source code |
| test_grafical_units | Source code |
| test_plot_nmr_challenges | Source code |
| test_plot_spectrum | Source code |
| testdir | Source code |
| timestamp | Source code |
| tmpdir | Man page Source code |
| tmpfile | Source code |
| transp | Man page Source code |
| tree | Man page Source code |
| type | Source code |
| update_defaults | Source code |
| update_sap | Source code |
| update_sim | Source code |
| usr_to_ndc | Source code |
| vcomp | Source code |
| width | Man page Source code |
| with_fig | Source code |
| write_parameters_txt | Source code |
| zip_persistent | Source code |
| zip_temp | Source code |
