Files in miRetrieve

miRNA Text Mining in Abstracts

NEWS.md README.md R/subset_articles_review_year.R R/self_made_topics.R R/lda_miretrieve.R R/prepare_make_dtm_helper.R R/pretty_breaks_helper.R R/df_panc.R R/patients_score.R R/wordcloud.R R/compare_mir_count.R R/mirna_year_new_and_trend.R R/stopwords_doc.R R/assign_topic.R R/count_mir_perc_total_threshold_helper.R R/load_and_save_files.R R/join_targets.R R/extract_mir.R R/biomarker_score.R R/combine_mir.R R/df_mirtarbase.R R/join_mirtarbase.R R/polymorphism.R R/top_words_count_words_helper.R R/count_mir_threshold.R R/df_test.R R/stopwords_ngram_roxygen.R R/generate_stopwords.R R/detect_single_term.R R/animals_score.R R/helper_control_shared_mir.R R/tfidf_words.R R/get_mir_vec.R R/distinct_shared_mir.R R/subset_mir.R R/target_mirna.R R/count_mir_single_topic.R R/globals.R R/get_pmid.R R/compare_mir_terms.R R/helper_calculate_score.R R/df_operations_combine_addtopic_subsetmir.R R/df_crc.R tests/testthat.R tests/testthat/test_loaddata.R tests/testthat/test-fitlda.R tests/testthat/test-getmirdf.R tests/testthat/test_subsetdf.R tests/testthat/test-assigntopic.R tests/testthat/test-plotscore.R tests/testthat/test-calculatescore.R tests/testthat/test-indicate.R tests/testthat/test-plotmirdevyear.R tests/testthat/test-combinedf.R tests/testthat/test_subsetyear.R tests/testthat/test_addcoltopic.R tests/testthat/test-countmir.R tests/testthat/test-plotmircount.R tests/testthat/test-plotmirterms.R tests/testthat/test-comparemircount.R tests/testthat/test-combinemir.R tests/testthat/test-comparemirterms.R tests/testthat/test-getpmid.R tests/testthat/test-joinmirtarbase.R tests/testthat/test-jointargets.R tests/testthat/test_extractmirdf.R tests/testthat/test-getmirvec.R tests/testthat/test-stopwords.R tests/testthat/test-snp.R tests/testthat/test-counttarget.R tests/testthat/test-subsetmir.R tests/testthat/test_extractmirstring.R tests/testthat/test-getmir.R tests/testthat/test-subsetarticletype.R man/get_shared_mir_df.Rd man/calculate_score_animals.Rd man/plot_mir_development.Rd man/subset_review.Rd man/compare_mir_terms_log2.Rd man/indicate_mir.Rd man/compare_mir_count.Rd man/combine_stopwords.Rd man/count_mir_threshold.Rd man/plot_wordcloud.Rd man/subset_df.Rd man/get_shared_mir_vec.Rd man/patients_keywords.Rd man/add_col_topic.Rd man/subset_mir.Rd man/stopwords_pubmed.Rd man/df_test.Rd man/stopwords_2gram.Rd man/read_pubmed_jats.Rd man/plot_target_count.Rd man/get_pmid.Rd man/subset_year.Rd man/compare_mir_count_unique.Rd man/plot_perplexity.Rd man/get_distinct_mir_vec.Rd man/assign_topic.Rd man/plot_target_mir_scatter.Rd man/combine_df.Rd man/get_mir.Rd man/df_mirtarbase.Rd man/count_mir.Rd man/count_target.Rd man/generate_stopwords.Rd man/biomarker_keywords.Rd man/calculate_score_topic.Rd man/calculate_score_patients.Rd man/subset_research.Rd man/compare_mir_terms_scatter.Rd man/plot_score_topic.Rd man/assign_topic_lda.Rd man/plot_mir_new.Rd man/calculate_score_biomarker.Rd man/ngram_stopwords.Rd man/compare_mir_terms_unique.Rd man/plot_mir_terms.Rd man/indicate_term.Rd man/extract_mir_df.Rd man/plot_lda_term.Rd man/df_panc.Rd man/stopwords_miretrieve.Rd man/plot_mir_count.Rd man/subset_mir_threshold.Rd man/save_excel.Rd man/fit_lda.Rd man/plot_mir_count_threshold.Rd man/combine_mir.Rd man/compare_mir_count_log2.Rd man/animal_keywords.Rd man/extract_snp.Rd man/extract_mir_string.Rd man/plot_score_patients.Rd man/df_crc.Rd man/subset_snp.Rd man/get_snp.Rd man/plot_score_biomarker.Rd man/read_pubmed.Rd man/get_distinct_mir_df.Rd man/compare_mir_terms.Rd man/join_mirtarbase.Rd man/save_plot.Rd man/plot_score_animals.Rd man/count_snp.Rd man/join_targets.Rd