Man pages for mxnorm
Apply Normalization Methods to Multiplexed Images
| mx_dataset | Generates mx_dataset |
| mx_normalize | Normalizes multiplexed data |
| mx_sample | Sample multiplexed dataset for 'mxnorm'. |
| plot_mx_density | Visualize marker density before/after normalization by marker... |
| plot_mx_discordance | Visualize Otsu discordance scores by marker and slide |
| plot_mx_proportions | Visualize variance proportions by marker and table |
| plot_mx_umap | Visualize UMAP dimension reduction algorithm |
| print.summary.mx_dataset | Extension of 'print' S3 method to print 'summary.mx_dataset'... |
| run_otsu_discordance | Calculate Otsu discordance scores using specified threshold... |
| run_reduce_umap | Run UMAP dimension reduction algorithm on an 'mx_dataset'... |
| run_var_proportions | Run random effects modeling on 'mx_dataset' object to... |
| summary.mx_dataset | Extension of 'summary' S3 method to summarize 'mx_dataset'... |
