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occumb: Site Occupancy Modeling for Environmental DNA Metabarcoding
Fits community site occupancy models to environmental DNA metabarcoding data collected using spatially-replicated survey design. Model fitting results can be used to evaluate and compare the effectiveness of species detection to find an efficient survey design. Reference: Fukaya et al. (2022) <doi:10.1111/2041-210X.13732>, Fukaya and Hasebe (2025) <doi:10.1101/2025.01.09.632116>.
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Package details |
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| Author | Keiichi Fukaya [aut, cre], Ken Kellner [cph] (summary method for occumbFit class), Mika Takahashi [aut] |
| Maintainer | Keiichi Fukaya <fukayak99@gmail.com> |
| License | GPL (>= 3) |
| Version | 1.2.0 |
| URL | https://fukayak.github.io/occumb/ https://github.com/fukayak/occumb |
| Package repository | View on CRAN |
| Installation |
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