Man pages for pKSEA
Prediction-Based Kinase-Substrate Enrichment Analysis
| batchrun | Running pKSEA::compare() on multiple files |
| calc_contribution | Calculate score contributions by phosphorylation site |
| compare | Running analysis runs on known substrates, predicted... |
| get_matched_data | Filtering data to matched predictions |
| getscores | Sum score contributions for each kinase across all... |
| getsubs | Extract summary table with pertinent columns related to... |
| KSEAdb | KSEAdb |
| KSEAfilter | Filter matched data to remove positive IDs from KSEA |
| mk_runlabel | mk_runlabel() |
| NetworKINPred_db | NetworKINPred_db |
| perc.permutation | Get percentile ranks across permutations |
| perc.rank | Obtain percentile rank comparing a single value to set |
| permtest | Perform permutation test |
| results_write | Output writing of pKSEA compare() results |
| run_on_matched | Runs pKSEA analysis on a dataset result from... |
