Man pages for paleoAM
Simulating Assemblage Models of Abundance for the Fossil Record
| calculateImplicitParameters | Calculate Implicit Parameters for Modeling Time-Series of... |
| getProbOccViaPresAbs | Estimate the Per-Species Probability of Occurrence as a... |
| getRecoveredTransitionDuration | Measure the Duration of a Transition Period from Recovered... |
| getSampleDCA | Get the Detrended correspondence Analysis (DCA) Score Value... |
| getSpeciesSpecificRescaledKDE | This is a function for Fitting a KDE to a specific species in... |
| getTimestepAbundances | Simulate Fossil Assemblages with Abundances at each Time-Step |
| gulfOfAlaska | Benthic Foram Abundances from the Gulf of Alaska Reported by... |
| hirnantian | Katian-Hirnantian Graptolite Assemblages Reported by Sheets... |
| plotFossilAssemblageSeriesDCA | Plot the Recovered DCA Values of a Fossil Assemblage Series |
| plotGradientKDE | Plot Kernel Density Estimates of Species Abundance Across a... |
| plotHeatmapComparison | Plots a Heatmap Comparison |
| sampleFossilSeries | Sample Fossil Assemblage Series |
| setupSimulatedGradientChange | Create a Stochastic Time-Series of Gradient Change For Use in... |
| simMixedAssemblageSample | Simulate a Mixed Fossil Assemblage Composed of Communities at... |
| simulateFossilAssemblageSeries | Simulate Time-Series of Successive Fossil Assemblages |
| simulateGradientQuantile | Repeatedly Simulate Sampled Assemblages at some Gradient... |
