| awkHelper | subset helper function for use reading in large data, called... |
| barg | Function to help fulfill elements of the Bayesian Analysis... |
| brmPlot | Function to visualize brms models similar to those made using... |
| brmSurvPlot | Function to visualize brms survival models specified using... |
| brmViolin | Function to visualize hypotheses tested on brms models... |
| bw.outliers | Remove outliers from bellwether data using cook's distance |
| bw.time | Time conversion and plotting for bellwether data |
| bw.water | Read in lemnatech watering data from metadata.json files |
| checkGroups | Helper function to check groups in data. |
| combineDraws | Combine Draws From brms Models |
| conjugate | Bayesian testing using conjugate priors and method of moments... |
| conjugate-class | Class 'conjugate' for output from the 'pcvr::conjugate'... |
| cumulativePheno | Reduce phenotypes in longitudinal data to cumulative sums of... |
| distributionPlot | Function for plotting iterations of posterior distributions |
| fitGrowth | Ease of use wrapper function for fitting various growth... |
| fitGrowthbrms | Ease of use brms wrapper function for fitting growth models... |
| fitGrowthflexsurv | Ease of use wrapper function for fitting growth models... |
| fitGrowthlm | Ease of use lm wrapper function for fitting growth models... |
| fitGrowthmgcvgam | Ease of use mgcv wrapper function for fitting gams specified... |
| fitGrowthnlme | Ease of use nlme wrapper function for fitting growth models... |
| fitGrowthnlmegam | Ease of use lme wrapper function for fitting gams specified... |
| fitGrowthnlrq | Ease of use nlrq wrapper function for fitting growth models... |
| fitGrowthnlrqgam | Ease of use rq wrapper function for fitting gams specified by... |
| fitGrowthnls | Ease of use nls wrapper function for fitting growth models... |
| fitGrowthnlsgam | Ease of use lm wrapper function for fitting gams specified by... |
| fitGrowthrq | Ease of use rq wrapper function for fitting models specified... |
| fitGrowthsurvreg | Ease of use wrapper function for fitting growth models... |
| flexsurvregPlot | Function to visualize 'flexsurv::flexsurvreg' models fit by... |
| frem | Variance partitioning using Full Random Effects Models |
| gam_diff | Helper function for visualizing differences in GAMs fit with... |
| growthPlot | Function to visualize models made by fitGrowth. |
| growthSim | Growth data simulating function |
| growthSS | Ease of use growth model helper function. |
| mv_ag | Multi Value Trait Aggregation function |
| mvSim | Multi Value Trait simulating function |
| mvSS | Ease of use multi-value trait model helper function. |
| net.plot | Visualizing igraph networks |
| nlmePlot | Function to visualize common 'nlme::nlme' growth models. |
| nlrqPlot | Function to visualize common 'quantreg::nlrq' growth models. |
| nlsPlot | Function to visualize common 'stats::nls' growth models. |
| pcadf | Function to run a PCA, plot and optionally return the data... |
| pcv.emd | Earth Mover's Distance between spectral histograms |
| pcv.joyplot | Make Joyplots for multi value trait plantCV data |
| pcv.net | Network analysis of a distance matrix |
| pcv.plsr | Run Partial Least Squares Regression on spectral data |
| pcvrss-class | Class 'pcvrss' for models specified in 'pcvr'. |
| pcv_theme | Default theme for ggplots made by pcvr functions. |
| plot.conjugate | Plot a 'conjugate' object. |
| plotPrior | Check priors used in ease of use brms functions |
| plotVIP | Plot Variable Influence on Projection |
| print.conjugate | Print a 'conjugate' object. |
| print.conjugatesummary | Print a 'conjugatesummary' object. |
| print.pcvrss | Print a 'pcvrss' object. |
| print.pcvrsssummary | Print a 'pcvrsssummary' object. |
| pwue | Calculate pseudo water use efficiency from phenotype and... |
| read.pcv | Read in plantCV csv output in wide or long format |
| read.pcv.3 | Read in plantCV csv from bellwether phenotyper style... |
| relativeTolerance | Calculate relative tolerance of some phenotype(s) relative to... |
| rqPlot | Function to visualize 'quantreg::rq' general additive growth... |
| summary.conjugate | Summarize a 'conjugate' object. |
| summary.pcvrss | Summarize a 'pcvrss' object. |
| survregPlot | Function to visualize 'survival::survreg' models fit by... |
| testGrowth | Hypothesis testing for fitGrowth models. |
