Man pages for pencal
Penalized Regression Calibration (PRC) for the Dynamic Prediction of Survival

draw_cluster_bootstrapDraw a cluster bootstrap sample from a data frame in long...
fit_lmmsStep 1 of PRC-LMM (estimation of the linear mixed models)
fit_mlpmmsStep 1 of PRC-MLPMM (estimation of the linear mixed models)
fit_prclmmStep 3 of PRC-LMM (estimation of the penalized Cox model(s))
fit_prcmlpmmStep 3 of PRC-MLPMM (estimation of the penalized Cox...
fitted_prclmmA fitted PRC LMM
fitted_prcmlpmmA fitted PRC MLPMM
pbc2datapbc2 dataset
pencoxEstimation of a penalized Cox model with time-independent...
performance_pencoxPredictive performance of the penalized Cox model with...
performance_prcPredictive performance of the PRC-LMM and PRC-MLPMM models
prepare_longdataPrepare longitudinal data for PRC
print.prclmmPrint method for PRC-LMM model fits
print.prcmlpmmPrint method for PRC-MLPMM model fits
simulate_prclmm_dataSimulate data that can be used to fit the PRC-LMM model
simulate_prcmlpmm_dataSimulate data that can be used to fit the PRC-LMM model
simulate_t_weibullGenerate survival data from a Weibull model
summarize_lmmsStep 2 of PRC-LMM (computation of the predicted random...
summarize_mlpmmsStep 2 of PRC-MLPMM (computation of the predicted random...
summary.lmmfitExtract model fits from step 1 of PRC-LMM
summary.mlpmmfitExtract model fits from step 1 of PRC-LMM
summary.prclmmSummary method for PRC-LMM model fits
summary.prcmlpmmSummary method for PRC-MLPMM model fits
summary.ranefsSummary for step 2 of PRC
survplot_prcVisualize survival predictions for a fitted PRC model
survpred_prclmmCompute the predicted survival probabilities obtained from...
survpred_prcmlpmmCompute the predicted survival probabilities obtained from...
pencal documentation built on April 3, 2025, 10:32 p.m.