Man pages for perumammals
Taxonomic Backbone and Name Validation Tools for Mammals of Peru
| check_backbone_update | Check if taxonomic backbone needs updating |
| direct_match | Direct Match Species Names Against Peru Mammals Database |
| dot-attach_metadata_peru | Attach Metadata to Results |
| dot-check_binomial | Check for binomial names in species list |
| dot-classify_algo | Classification algorithm for a single name |
| dot-classify_inputs_peru | Classify Input Species Names |
| dot-combine_matched_nodes_peru | Combine Matched Nodes |
| dot-combine_unmatched_nodes_peru | Combine Unmatched Nodes |
| dot-compute_matched_rank_peru | Compute Matched Rank for Peru Mammals |
| dot-consolidate_ambiguous_attrs_peru | Consolidate Ambiguous Match Attributes |
| dot-detect_trinomial | Detect trinomial names (3+ taxonomic elements) |
| dot-empty_output_peru | Create Empty Output Template |
| dot-final_assertions_peru | Final Validation of Results |
| dot-finalize_output_peru | Finalize Output Format |
| dot-format_matched_names_peru | Format Matched Names for Display |
| dot-get_mammals_genus | Get mammals species by genus from peru_mammals |
| dot-init_matching_columns_peru | Initialize Matching Columns |
| dot-invalidate_trinomials | Invalidate trinomial matches in validation results |
| dot-join_database_info_peru | Join Additional Database Information |
| dot-load_target_peru | Load Peru Mammals Database |
| dot-map_dfr_progress | Map with optional progress bar |
| dot-names_standardize | Standardize species names for matching with Peru mammals... |
| dot-onAttach | .onAttach hook |
| dot-onLoad | .onLoad hook |
| dot-pipeline_nodes_peru | Matching Pipeline - Hierarchical Strategy |
| dot-splist_classify | Classify species names into taxonomic components |
| dot-split_valid_invalid_peru | Split Valid and Invalid Names |
| dot-str_to_simple_cap | Convert to sentence case (first letter uppercase, rest... |
| dot-transform_split_classify | Transform and structure classified names |
| dot-validate_inputs_peru | Validate Input Parameters |
| dot-validate_target_schema_peru | Validate Target Database Schema |
| found_in_peru | Quick check: Is species found in Peru? |
| fuzzy_match_genus | Fuzzy Match Genus Name Against Peru Mammals Database |
| fuzzy_match_species_within_genus | Fuzzy Match Species within Genus in Peru Mammals Database |
| fuzzy_match_species_within_genus_helper | Helper: Fuzzy Match Species within Genus |
| genus_match | Match Genus Names Against Peru Mammals Database |
| get_ambiguous_matches | Retrieve Ambiguous Match Information for Peru Mammals |
| get_common_names_peru | Get taxonomic and common name information for Peru mammals |
| get_species_for_genera | Get All Species for Matched Genera from Peru Mammals |
| is_endemic_peru | Check if species are endemic to Peru |
| is_peru_mammal | Check if species are Peru mammals |
| match_quality_peru | Get match quality for Peru mammal names |
| peru_mammals | Mammal species of Peru based on Pacheco et al. (2021) |
| peru_mammals_backbone | Summary information on the 'perumammals' taxonomic backbone |
| peru_mammals_ecoregions | Mammal species by Peruvian ecoregion |
| peru_mammals_ecoregions_meta | Metadata for Peruvian mammal ecoregions |
| pm_backbone_info | Display taxonomic backbone metadata for Peruvian mammals |
| pm_by_ecoregion | List species by ecoregion |
| pm_ecoregion_summary | Summary of species richness by ecoregion |
| pm_endemics | List endemic mammal species of Peru |
| pm_list_ecoregions | Display ecoregion metadata for Peruvian mammals |
| pm_list_endemic | List endemic mammal species by taxonomic order |
| pm_list_families | List taxonomic families in the Peruvian mammal backbone |
| pm_list_genera | List genera in the Peruvian mammal backbone |
| pm_list_orders | List taxonomic orders in the Peruvian mammal backbone |
| pm_species | Filter mammal species from the Peruvian backbone |
| show_progress | Determine whether to show progress bar |
| validate_peru_mammals | Match Species Names Against Peru Mammals Database |
