Man pages for randPedPCA
Fast PCA for Large Pedigrees
| dspc | Add downsampling index to rppca object |
| getNumVectorsHutchinson | Compute the number of vectors to use for Hutchinson trace... |
| hutchpp | Hutch++ trace estimation |
| importLinv | Generate spam object from L inverse file |
| pedLInv | L inverse matrix of the one-population example pedigree |
| pedLInv2 | L inverse matrix of the two-population example pedigree |
| pedLInv4 | L inverse matrix of the four-population example pedigree |
| pedMeta | Metadata associated with one-population example |
| pedMeta2 | Metadata associated with the two-population example pedigree |
| pedMeta4 | Metadata associated with the four-population example pedigree |
| plot3D | 3D plot using rgl |
| plot3DWithProj | 3D plot of PC scores with projections on coordinate planes |
| randRangeFinder | Generate range matrix for SVD |
| randSVD | Singular value decomposition in sparse triangular matrix |
| randTraceHutchinson | Trace estimation for sparse L inverse matrices |
| rppca | Fast pedigree PCA using sparse matrices and randomised linear... |
| sparse2spam | Convert generic sparse matrix to spam format |
