Man pages for scGate
Marker-Based Cell Type Purification for Single-Cell Sequencing Data
| combine_scGate_multiclass | Combine scGate annotations |
| gating_model | Model creation and editing |
| genes.blacklist.default | Blocklist of genes for dimensionality reduction |
| get_scGateDB | Load scGate model database |
| get_testing_data | Download sample data |
| load_scGate_model | Load a single scGate model |
| performance.metrics | Performance metrics |
| plot_levels | Plot scGate filtering results by level |
| plot_tree | Plot model tree |
| plot_UCell_scores | Plot UCell scores by level |
| query.seurat | Toy dataset to test the package |
| scGate | Filter single-cell data by cell type |
| test_my_model | Test your model |
