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scTEP: Single-Cell Trajectory Inference using Ensemble Pseudotimes
A single-cell trajectory inference method using 'Autoencoder' and Minimum Spanning Tree (MST) from high dimensional 'scRNA-Seq' data. The software run clustering methods six times using 'scDHA' with the number of clusters set from 6 to 10. Then, the 'scTEP' calculates pseudotime based on multiple clustering results. Lastly, the 'scTEP' generates trajectory using MST algorithm and fine-tunes it according to the pseudotime of clusters.
Getting started
Browse package contents
Package details |
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| Author | Yifan Zhang [aut, cre], Duc Tran [aut], Tin Nguyen [fnd], Sergiu M. Dascalu [fnd], Frederick C. Harris, Jr. [fnd] |
| Maintainer | Yifan Zhang <yfzhang@nevada.unr.edu> |
| License | LGPL |
| Version | 0.1.0 |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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