Man pages for scbursts
Single Channel Bursts Analysis
| bursts.check_subconductance | Check if segment contains subconductive states |
| bursts.conductance_states | Return a list of all the (sub)conductance states. |
| bursts.copy | Copy a list of bursts (by value) |
| bursts.defined_by_tcrit | Divide a recording into bursts defined by a critical time. |
| bursts.get_gaps | Get the gaps between bursts. |
| bursts.impose_deadtime | Imposes a deadtime to each segment in a burst. |
| bursts.modify_conductance | Transform the conductance states according to a user-defined... |
| bursts.pcloseds | Return pcloseds of every burst. |
| bursts.popens | Return popens of every burst. |
| bursts.recombine | Combine bursts into one recording (with obvious spaces... |
| bursts.remove_first_and_last | Remove the first and last burst from the list. |
| bursts.select | From a list of bursts, extract those that interest you by... |
| bursts.sort | Order a list of bursts by some function. For instance, popen. |
| bursts.space_out | Artificially add amount of time between bursts (in absence of... |
| bursts.start_times_update | (DON'T USE THIS) Fix meta-data of bursts. |
| bursts.subconductance_as | Imposes a fixed conductance level (0 or 1) to all dwells with... |
| clampfit.read | Read a .xlsx file output from clampfit |
| cplot.conductance_hist | Histogram of Conductance States |
| cplot.log_root_axes | Add log-root axes to histogram plot |
| cplot.pclosed_ts | Plot Time Series (ts) of P(Closed). |
| cplot.popen_ts | Plot Time Series (ts) of P(Open). |
| dwt.read | Read a .dwt file. |
| dwt.write | Write a dwt file to disk. Writes DOS line endings. Dwells are... |
| evt.extract_header | Extract header from evt file. |
| evt.from_dwells | Converts dwell durations to absolute transition times. |
| evt.read | Read a .evt file to a table. Times are in seconds |
| evt.to_dwells | Calculate pulse lengths. Converts transition times to dwell... |
| evt.write | Write bursts to a .evt file. |
| hst.extract_header | Extract header from hst file. |
| hst.read | Read a MIL ".hst" file to a table. |
| hst.write | Write bursts to a log10(ms)-sqrt(Frequency) .hst file from... |
| risetime.correct_gaussian | Undo the effect of the gaussian filter. |
| scan.read | Read a scan results text file. scan.read returns a 1 segment... |
| segment.check_subconductance | Check if segment contains subconductive states |
| segment.closed_dwells | Extract closed dwells. |
| segment.conductance_states | Return a list of all the (sub)conductance states. |
| segment.consecutives_to_dwells | Collapses a segment into dwells with alternating conductance... |
| segment.copy | Copy a segment |
| segment.count_closed | Extract number of closed dwells. In the case of subconductive... |
| segment.count_dwells | Extract number of dwells in segment. |
| segment.count_open | Extract number of open dwells. In the case of subconductive... |
| segment.create | Create a "segment" object |
| segment.duration | Get duration of a segment. |
| segment.dwells_by_conductance | Extract dwells in conductance range. lower <= x <= upper |
| segment.dwells_by_conductance_range | Extract dwells in conductance range. lower <= x <= upper |
| segment.impose_deadtime | Imposes a deadtime to a segment by removing any dwell that is... |
| segment.modify_conductance | Transform the conductance states according to a user-defined... |
| segment.name | Extract name from segment. |
| segment.open_dwells | Extract open dwells. (Any conductance greater than zero) |
| segment.pclosed | Calculate empirical P(Closed) of a segment. |
| segment.pconductance | Calculate empirical P(Lower <= Conductance <= Upper) of a... |
| segment.pconductance_range | Calculate empirical P(Lower <= Conductance <= Upper) of a... |
| segment.popen | Calculate empirical P(Open) of a segment. (A state is... |
| segment.seg | Extract segment number from segment. |
| segment.start_time | Extract start_time from segment. |
| segment.subconductance_as | Imposes a fixed conductance level (0 or 1) to all dwells with... |
| segment.verify | Detect misrecorded data. |
| util.basename | Remove suffix and path from filename. |
