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scistreer: Maximum-Likelihood Perfect Phylogeny Inference at Scale
Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).
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Package details |
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| Author | Teng Gao [cre, aut], Evan Biederstedt [aut], Peter Kharchenko [aut], Yufeng Wu [aut] |
| Maintainer | Teng Gao <tgaoteng@gmail.com> |
| License | GPL-3 |
| Version | 1.2.0 |
| URL | https://github.com/kharchenkolab/scistreer https://kharchenkolab.github.io/scistreer/ |
| Package repository | View on CRAN |
| Installation |
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