Man pages for scistreer
Maximum-Likelihood Perfect Phylogeny Inference at Scale
| annotate_tree | Find maximum lilkelihood assignment of mutations on a tree |
| get_mut_graph | Convert a single-cell phylogeny with mutation placements into... |
| gtree_small | Smaller example annotated tree built from P_small |
| label_edges | Annotate the direct upstream or downstream mutations on the... |
| ladderize | From ape; will remove once new ape version is released... |
| mut_nodes_small | Mutation placements calculated from tree_small and P_small |
| mut_to_tree | Transfer mutation assignment onto a single-cell phylogeny |
| perform_nni | Maximum likelihood tree search via NNI |
| P_example | Example genotype probability matrix |
| plot_phylo_heatmap | Plot phylogeny and mutation heatmap |
| P_small | Smaller example genotype probability matrix |
| run_scistree | Run the scistree workflow |
| score_tree | Score a tree based on maximum likelihood |
| to_phylo | Convert the phylogeny from tidygraph to phylo object modified... |
| transfer_links | Annotate the direct upstream or downstream node on the edges |
| tree_small | Smaller example tree built from P_small |
| tree_upgma | Example tree built using UPGMA from P_small |
