Nothing
seq2R: Simple Method to Detect Compositional Changes in Genomic Sequences
This software is useful for loading '.fasta' or '.gbk' files, and for retrieving sequences from 'GenBank' dataset <https://www.ncbi.nlm.nih.gov/genbank/>. This package allows to detect differences or asymmetries based on nucleotide composition by using local linear kernel smoothers. Also, it is possible to draw inference about critical points (i. e. maximum or minimum points) related with the derivative curves. Additionally, bootstrap methods have been used for estimating confidence intervals and speed computational techniques (binning techniques) have been implemented in 'seq2R'.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Nora M. Villanueva [aut, cre] (<https://orcid.org/0000-0001-8085-2745>), Marta Sestelo [aut] (<https://orcid.org/0000-0003-4284-6509>), Alan Miller [ctb] (FORTRAN code lsq.f90: weighted least-squares module) |
| Maintainer | Nora M. Villanueva <nmvillanueva@uvigo.gal> |
| License | GPL |
| Version | 2.0.1 |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
|
Try the seq2R package in your browser
Any scripts or data that you put into this service are public.
