Man pages for simlandr
Simulation-Based Landscape Construction for Dynamical Systems
| arg_set-class | Create and modify argument sets, then make an argument grid... |
| as.mcmc.list | as.mcmc.list generic function |
| as.mcmc.list.list | Convert a list of simulation output to a mcmc.list object |
| attach_all_matrices | Attach all matrices in a batch simulation |
| autolayer | Autolayer generic function |
| autolayer.barrier | Get a ggplot2 layer from a barrier object |
| batch_simulation | Perform a batch simulation. |
| calculate_barrier | Functions for calculating energy barrier from landscapes |
| check_conv | Graphical diagnoses to check if the simulation converges |
| fill_in_struct | Fill a vector of values into a structure list. |
| get_barrier_height | Summarize the barrier height from a 'barrier' object |
| get_dist | Get the probability distribution from a landscape object |
| get_geom | Get a ggplot2 layer from a barrier object |
| hash_big_matrix-class | Class "hash_big_matrix": big matrix with a md5 hash reference |
| make_2d_matrix | Make a matrix of 2D static landscape plots for one or two... |
| make_2d_static | Make 2D static landscape plot for a single simulation output |
| make_2d_tidy_dist | Make a tidy 'data.frame' from smooth 2d distribution matrix |
| make_3d_animation | Make 3d animations from multiple simulations |
| make_3d_matrix | Make a matrix of 3D static landscape plots for one or two... |
| make_3d_static | Make 3D static landscape plots from simulation output |
| make_4d_static | Make 4D static space-color plots from simulation output |
| make_barrier_grid_2d | Make a grid for calculating barriers for 2d landscapes |
| make_barrier_grid_3d | Make a grid for calculating barriers for 3d landscapes |
| make_kernel_dist | Calculate 1D, 2D, or 3D kernel smooth distribution |
| modified_simulation | Modify a single simulation |
| multi_init_simulation | Simulate multiple 1-3D Markovian Stochastic Differential... |
| pipe | Pipe operator |
| plot.landscape | Make plots from landscape objects |
| save_landscape | Save landscape plots |
| sim_fun_grad | A simple gradient simulation function for testing |
| sim_fun_nongrad | A simple non-gradient simulation function for testing |
| sim_fun_test | A simple simulation function for testing |
| sim_fun_test2 | A simple yet meaningful simulation function for testing |
| simlandr-package | simlandr: Simulation-Based Landscape Construction for... |
| sim_SDE | Simulate 1-3D Markovian Stochastic Differential Equations |
| summary.barrier | Summarize the barrier height from a 'barrier' object |
