Man pages for sjSDM
Scalable Joint Species Distribution Modeling
| AccSGD | AccSGD |
| AdaBound | AdaBound |
| Adamax | Adamax |
| anova.sjSDM | Anova / Variation partitioning |
| bioticStruct | biotic structure |
| butterflies | butterflies |
| checkModel | check model check model and rebuild if necessary |
| check_module | check module |
| coef.sjSDM | Return coefficients from a fitted sjSDM model |
| DiffGrad | DiffGrad |
| DNN | Non-linear model (deep neural network) of environmental... |
| eucalypts | eucalypts |
| generateSpatialEV | Generate spatial eigenvectors |
| getCor | getCor |
| getCov | getCov |
| getImportance | getImportance |
| getSe | Post hoc calculation of standard errors |
| getWeights | Get weights |
| importance | Importance of environmental, spatial and association... |
| installation_help | Installation help |
| install_diagnostic | install diagnostic |
| install_sjSDM | Install sjSDM and its dependencies |
| internalStructure | Plot internal metacommunity structure |
| is_torch_available | is_torch_available |
| linear | Linear model of environmental response |
| logLik.sjSDM | Extract negative-log-Likelihood from a fitted sjSDM model |
| madgrad | madgrad |
| new_image | new_image function |
| plotAssemblyEffects | Plot predictors of assembly processes |
| plot.sjSDM | Coefficients plot |
| plot.sjSDManova | Plot anova results |
| plotsjSDMcoef | Internal coefficients plot |
| plot.sjSDM_cv | Plot elastic net tuning |
| plot.sjSDM.DNN | Training history |
| plot.sjSDMimportance | Plot importance |
| plot.sjSDMinternalStructure | Plot internal structure |
| predict.sjSDM | Predict from a fitted sjSDM model |
| print.bioticStruct | Print a bioticStruct object |
| print.DNN | Print a DNN object |
| print.linear | Print a linear object |
| print.sjSDM | Print a fitted sjSDM model |
| print.sjSDManova | Print sjSDM anova object |
| print.sjSDM_cv | Print a fitted sjSDM_cv model |
| print.sjSDMimportance | Print importance |
| print.sjSDMinternalStructure | Print internal structure object |
| residuals.sjSDM | Residuals for a sjSDM model |
| RMSprop | RMSprop |
| Rsquared | R-squared |
| setWeights | Set weights |
| SGD | SGD |
| simulate_SDM | Simulate joint Species Distribution Models |
| simulate.sjSDM | Generates simulations from sjSDM model |
| sjSDM | Fitting scalable joint Species Distribution Models (sjSDM) |
| sjSDMControl | sjSDM control object |
| sjSDM_cv | Cross validation of elastic net tuning |
| summary.sjSDM | Return summary of a fitted sjSDM model |
| summary.sjSDManova | Summary table of sjSDM anova |
| summary.sjSDM_cv | Return summary of a fitted sjSDM_cv model |
| update.sjSDM | Update and re-fit a model call |
