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Population genetics package for designing diagnostic panels. Candidate markers, marker combinations, and different panel sizes are assessed for how well they can predict the source population of known samples. Requires a genotype file of candidate markers in STRUCTURE format. Methods for population cross-validation are described in Jombart (2008) <doi:10.1093/bioinformatics/btn129>.
Package details |
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Author | Kim Vertacnik [cre, aut] (<https://orcid.org/0009-0006-7097-5091>), Oksana Vernygora [aut] (<https://orcid.org/0000-0001-6444-3888>), Julian Dupuis [aut] (<https://orcid.org/0000-0002-6989-9179>) |
Maintainer | Kim Vertacnik <kim.vertacnik@mailbox.org> |
License | MIT + file LICENSE |
Version | 2.1.1 |
URL | https://github.com/OksanaVe/snpAIMeR |
Package repository | View on CRAN |
Installation |
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