snpAIMeR: Assess the Diagnostic Power of Genomic Marker Combinations

Population genetics package for designing diagnostic panels. Candidate markers, marker combinations, and different panel sizes are assessed for how well they can predict the source population of known samples. Requires a genotype file of candidate markers in STRUCTURE format. Methods for population cross-validation are described in Jombart (2008) <doi:10.1093/bioinformatics/btn129>.

Getting started

Package details

AuthorKim Vertacnik [cre, aut] (<https://orcid.org/0009-0006-7097-5091>), Oksana Vernygora [aut] (<https://orcid.org/0000-0001-6444-3888>), Julian Dupuis [aut] (<https://orcid.org/0000-0002-6989-9179>)
MaintainerKim Vertacnik <kim.vertacnik@mailbox.org>
LicenseMIT + file LICENSE
Version2.1.1
URL https://github.com/OksanaVe/snpAIMeR
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("snpAIMeR")

Try the snpAIMeR package in your browser

Any scripts or data that you put into this service are public.

snpAIMeR documentation built on June 24, 2024, 9:09 a.m.