Files in spatialGE
Visualization and Analysis of Spatial Heterogeneity in Spatially-Resolved Gene Expression
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R
R/import_xenium.R
R/gene_interpolation.R
R/STdiff_volcano.R
R/STplot_interpolation.R
R/STList.R
R/filter_data.R
R/STclust.R
R/STgradient.R
R/transform_data.R
R/plot_helpers.R
R/classDefinitions.R
R/plot_spatial_meta.R
R/compare_SThet.R
R/SThet_invdist_test.R
R/import_visium.R
R/STdiff.R
R/import_smi.R
R/SThet.R
R/STenrich.R
R/pseudobulk_samples.R
R/plot_counts.R
R/plot_spatial_expression.R
R/plot_spatial_geneset.R
R/STplot.R
R/distribution_plots.R
R/zzz.R
R/globals.R
R/plot_image.R
R/seurat_helpers.R
R/summarize_STlist.R
R/detect_input.R
R/utils.R
src/seurat_helpers.cpp
src/RcppExports.cpp
src/spatialge_helpers.cpp
inst/COPYRIGHT
inst/err.csv
inst/doc/basic_functions_vignette.html
inst/doc/basic_functions_vignette.R
inst/doc/basic_functions_vignette.Rmd
build/vignette.rds
tests/testthat.R
tests/testthat/test-tests.R
vignettes/vignette_references.bib
vignettes/basic_functions_vignette.Rmd
vignettes/img/metadata_file.png
vignettes/img/dir_structure.png
vignettes/img/spatialGE_workflow_v3.png
vignettes/img/logo.png
man/dim-STlist-method.Rd
man/plot_counts.Rd
man/compare_SThet.Rd
man/load_images.Rd
man/SThet.Rd
man/STgradient.Rd
man/plot_image.Rd
man/STplot_interpolation.Rd
man/get_gene_meta.Rd
man/STdiff_volcano.Rd
man/summarize_STlist.Rd
man/distribution_plots.Rd
man/STlist-class.Rd
man/spatial_metadata.Rd
man/STclust.Rd
man/STenrich.Rd
man/pseudobulk_heatmap.Rd
man/pseudobulk_samples.Rd
man/STplot.Rd
man/show-STlist-method.Rd
man/gene_interpolation.Rd
man/filter_data.Rd
man/STdiff.Rd
man/tissue_names.Rd
man/transform_data.Rd
man/summary-STlist-method.Rd
man/STlist.Rd
man/pseudobulk_dim_plot.Rd
