Files in speakeasyR
Fast and Robust Multi-Scale Graph Clustering

configure

MD5

NEWS.md README.md

NAMESPACE

configure.ac

DESCRIPTION

cleanup.win

configure.win

cleanup

R/cluster.R R/knn_graph.R R/speakeasyR-package.R R/order_nodes.R R/cluster_genes.R R/utils.R

src/speakeasyR-win.def

src/Makevars.in

src/speakeasyR.c

src/include/igraph_config.h

src/include/config.h.win

src/include/igraph_export.h

src/include/config.h.in

src/include/igraph_version.h

src/include/igraph_threading.h

src/arpack/dnaup2.f

src/arpack/dneigh.f

src/arpack/dnapps.f

src/arpack/dsaitr.f

src/arpack/dngets.f

src/arpack/dnaitr.f

src/arpack/dsgets.f

src/arpack/dsapps.f

src/arpack/dstqrb.f

src/arpack/dgetv0.f

src/arpack/dsconv.f

src/arpack/dseupd.f

src/arpack/dneupd.f

src/arpack/dsaupd.f

src/arpack/dseigt.f

src/arpack/dsaup2.f

src/arpack/dnaupd.f

src/arpack/dsesrt.f

src/arpack/dsortr.f

src/arpack/README.txt

src/arpack/COPYING

src/arpack/dsortc.f

src/arpack/dnconv.f

src/se2/CMakeLists.txt

src/se2/LICENSE

src/se2/include/se2_version.h.in

src/se2/include/speak_easy_2.h

src/se2/benchmarks/modularity_pairs.png

src/se2/benchmarks/se2_benchmarks.tsv

src/se2/benchmarks/modularity_dist.png

src/se2/benchmarks/README.org

src/se2/benchmarks/nmi_dist.png

src/se2/src/speakeasy2/se2_partitions.c

src/se2/src/speakeasy2/se2_knn_graph.c

src/se2/src/speakeasy2/se2_order_nodes.c

src/se2/src/speakeasy2/se2_interface.h

src/se2/src/speakeasy2/se2_label.c

src/se2/src/speakeasy2/se2_neighborlist.c

src/se2/src/speakeasy2/se2_random.h

src/se2/src/speakeasy2/se2_modes.h

src/se2/src/speakeasy2/se2_label.h

src/se2/src/speakeasy2/se2_reweigh_graph.c

src/se2/src/speakeasy2/se2_random.c

src/se2/src/speakeasy2/se2_reweigh_graph.h

src/se2/src/speakeasy2/se2_seeding.c

src/se2/src/speakeasy2/CMakeLists.txt

src/se2/src/speakeasy2/se2_error_handling.h

src/se2/src/speakeasy2/se2_neighborlist.h

src/se2/src/speakeasy2/se2_partitions.h

src/se2/src/speakeasy2/se2_core.c

src/se2/src/speakeasy2/se2_modes.c

src/se2/src/speakeasy2/se2_seeding.h

src/se2/vendor/CMakeLists.txt

src/se2/vendor/igraph/CONTRIBUTORS.txt

src/se2/vendor/igraph/CONTRIBUTORS.md

src/se2/vendor/igraph/ChangeLog

src/se2/vendor/igraph/CONTRIBUTING.md

src/se2/vendor/igraph/NEWS

src/se2/vendor/igraph/ONEWS

src/se2/vendor/igraph/README.md

src/se2/vendor/igraph/AUTHORS

src/se2/vendor/igraph/codecov.yml

src/se2/vendor/igraph/CHANGELOG.md

src/se2/vendor/igraph/COPYING

src/se2/vendor/igraph/SUPPORT.md

src/se2/vendor/igraph/include/igraph_heap_pmt.h

src/se2/vendor/igraph/include/igraph_types.h

src/se2/vendor/igraph/include/igraph_bipartite.h

src/se2/vendor/igraph/include/igraph_community.h

src/se2/vendor/igraph/include/igraph_iterators.h

src/se2/vendor/igraph/include/igraph_eigen.h

src/se2/vendor/igraph/include/igraph_operators.h

src/se2/vendor/igraph/include/igraph_layout.h

src/se2/vendor/igraph/include/igraph_separators.h

src/se2/vendor/igraph/include/igraph_motifs.h

src/se2/vendor/igraph/include/igraph_cliques.h

src/se2/vendor/igraph/include/igraph_threading.h.in

src/se2/vendor/igraph/include/igraph_transitivity.h

src/se2/vendor/igraph/include/igraph_paths.h

src/se2/vendor/igraph/include/igraph_decls.h

src/se2/vendor/igraph/include/igraph_hrg.h

src/se2/vendor/igraph/include/igraph_microscopic_update.h

src/se2/vendor/igraph/include/igraph_matrix.h

src/se2/vendor/igraph/include/igraph_heap.h

src/se2/vendor/igraph/include/igraph_qsort.h

src/se2/vendor/igraph/include/igraph_cohesive_blocks.h

src/se2/vendor/igraph/include/igraph_structural.h

src/se2/vendor/igraph/include/igraph_cocitation.h

src/se2/vendor/igraph/include/igraph_vector_list.h

src/se2/vendor/igraph/include/igraph_constants.h

src/se2/vendor/igraph/include/igraph_coloring.h

src/se2/vendor/igraph/include/igraph_blas.h

src/se2/vendor/igraph/include/igraph_interface.h

src/se2/vendor/igraph/include/igraph_adjlist.h

src/se2/vendor/igraph/include/igraph_statusbar.h

src/se2/vendor/igraph/include/igraph_complex.h

src/se2/vendor/igraph/include/igraph_epidemics.h

src/se2/vendor/igraph/include/igraph_lsap.h

src/se2/vendor/igraph/include/igraph_graphlets.h

src/se2/vendor/igraph/include/igraph_vector_ptr.h

src/se2/vendor/igraph/include/igraph_graph_list.h

src/se2/vendor/igraph/include/igraph_flow.h

src/se2/vendor/igraph/include/igraph_sparsemat.h

src/se2/vendor/igraph/include/igraph_interrupt.h

src/se2/vendor/igraph/include/igraph_cycles.h

src/se2/vendor/igraph/include/igraph_random.h

src/se2/vendor/igraph/include/igraph_topology.h

src/se2/vendor/igraph/include/igraph_components.h

src/se2/vendor/igraph/include/igraph_progress.h

src/se2/vendor/igraph/include/igraph_vector_pmt.h

src/se2/vendor/igraph/include/igraph_array.h

src/se2/vendor/igraph/include/igraph_lapack.h

src/se2/vendor/igraph/include/igraph_dqueue_pmt.h

src/se2/vendor/igraph/include/igraph_centrality.h

src/se2/vendor/igraph/include/igraph.h

src/se2/vendor/igraph/include/igraph_arpack.h

src/se2/vendor/igraph/include/igraph_scan.h

src/se2/vendor/igraph/include/igraph_embedding.h

src/se2/vendor/igraph/include/igraph_typed_list_pmt.h

src/se2/vendor/igraph/include/igraph_config.h.in

src/se2/vendor/igraph/include/igraph_error.h

src/se2/vendor/igraph/include/igraph_bitset.h

src/se2/vendor/igraph/include/igraph_strvector.h

src/se2/vendor/igraph/include/igraph_visitor.h

src/se2/vendor/igraph/include/igraph_datatype.h

src/se2/vendor/igraph/include/igraph_stack_pmt.h

src/se2/vendor/igraph/include/igraph_version.h.in

src/se2/vendor/igraph/include/igraph_reachability.h

src/se2/vendor/igraph/include/igraph_array_pmt.h

src/se2/vendor/igraph/include/igraph_nongraph.h

src/se2/vendor/igraph/include/igraph_foreign.h

src/se2/vendor/igraph/include/igraph_stack.h

src/se2/vendor/igraph/include/igraph_eulerian.h

src/se2/vendor/igraph/include/igraph_matrix_list.h

src/se2/vendor/igraph/include/igraph_games.h

src/se2/vendor/igraph/include/igraph_matching.h

src/se2/vendor/igraph/include/igraph_graphicality.h

src/se2/vendor/igraph/include/igraph_attributes.h

src/se2/vendor/igraph/include/igraph_vector_type.h

src/se2/vendor/igraph/include/igraph_constructors.h

src/se2/vendor/igraph/include/igraph_matrix_pmt.h

src/se2/vendor/igraph/include/igraph_mixing.h

src/se2/vendor/igraph/include/igraph_neighborhood.h

src/se2/vendor/igraph/include/igraph_pmt_off.h

src/se2/vendor/igraph/include/igraph_pmt.h

src/se2/vendor/igraph/include/igraph_psumtree.h

src/se2/vendor/igraph/include/igraph_vector.h

src/se2/vendor/igraph/include/igraph_memory.h

src/se2/vendor/igraph/include/igraph_bitset_list.h

src/se2/vendor/igraph/include/igraph_conversion.h

src/se2/vendor/igraph/include/igraph_dqueue.h

src/se2/vendor/igraph/src/version.c

src/se2/vendor/igraph/src/config.h.in

src/se2/vendor/igraph/src/cycles/simple_cycles.c

src/se2/vendor/igraph/src/graph/caching.c

src/se2/vendor/igraph/src/graph/type_indexededgelist.c

src/se2/vendor/igraph/src/graph/basic_query.c

src/se2/vendor/igraph/src/graph/cattributes.c

src/se2/vendor/igraph/src/graph/caching.h

src/se2/vendor/igraph/src/graph/adjlist.c

src/se2/vendor/igraph/src/graph/attributes.c

src/se2/vendor/igraph/src/graph/visitors.c

src/se2/vendor/igraph/src/graph/iterators.c

src/se2/vendor/igraph/src/graph/type_common.c

src/se2/vendor/igraph/src/graph/graph_list.c

src/se2/vendor/igraph/src/graph/attributes.h

src/se2/vendor/igraph/src/graph/internal.h

src/se2/vendor/igraph/src/linalg/lapack_internal.h

src/se2/vendor/igraph/src/linalg/arpack_internal.h

src/se2/vendor/igraph/src/linalg/eigen.c

src/se2/vendor/igraph/src/linalg/arpack.c

src/se2/vendor/igraph/src/linalg/blas_internal.h

src/se2/vendor/igraph/src/linalg/blas.c

src/se2/vendor/igraph/src/linalg/lapack.c

src/se2/vendor/igraph/src/random/rng_pcg64.c

src/se2/vendor/igraph/src/random/rng_pcg32.c

src/se2/vendor/igraph/src/random/rng_glibc2.c

src/se2/vendor/igraph/src/random/random.c

src/se2/vendor/igraph/src/random/rng_mt19937.c

src/se2/vendor/igraph/src/random/random_internal.h

src/se2/vendor/igraph/src/core/stack.c

src/se2/vendor/igraph/src/core/trie.h

src/se2/vendor/igraph/src/core/estack.c

src/se2/vendor/igraph/src/core/indheap.h

src/se2/vendor/igraph/src/core/sparsemat.c

src/se2/vendor/igraph/src/core/indheap.c

src/se2/vendor/igraph/src/core/grid.c

src/se2/vendor/igraph/src/core/matrix.pmt

src/se2/vendor/igraph/src/core/exceptions.h

src/se2/vendor/igraph/src/core/array.pmt

src/se2/vendor/igraph/src/core/psumtree.c

src/se2/vendor/igraph/src/core/matrix.c

src/se2/vendor/igraph/src/core/genheap.h

src/se2/vendor/igraph/src/core/buckets.h

src/se2/vendor/igraph/src/core/array.c

src/se2/vendor/igraph/src/core/estack.h

src/se2/vendor/igraph/src/core/buckets.c

src/se2/vendor/igraph/src/core/fixed_vectorlist.h

src/se2/vendor/igraph/src/core/interruption.h

src/se2/vendor/igraph/src/core/cutheap.c

src/se2/vendor/igraph/src/core/typed_list.pmt

src/se2/vendor/igraph/src/core/vector.c

src/se2/vendor/igraph/src/core/matrix_list.c

src/se2/vendor/igraph/src/core/vector_list.c

src/se2/vendor/igraph/src/core/heap.c

src/se2/vendor/igraph/src/core/interruption.c

src/se2/vendor/igraph/src/core/printing.c

src/se2/vendor/igraph/src/core/cutheap.h

src/se2/vendor/igraph/src/core/vector.pmt

src/se2/vendor/igraph/src/core/set.h

src/se2/vendor/igraph/src/core/marked_queue.c

src/se2/vendor/igraph/src/core/fixed_vectorlist.c

src/se2/vendor/igraph/src/core/grid.h

src/se2/vendor/igraph/src/core/heap.pmt

src/se2/vendor/igraph/src/core/trie.c

src/se2/vendor/igraph/src/core/vector_ptr.c

src/se2/vendor/igraph/src/core/set.c

src/se2/vendor/igraph/src/core/stack.pmt

src/se2/vendor/igraph/src/core/strvector.c

src/se2/vendor/igraph/src/core/math.h

src/se2/vendor/igraph/src/core/bitset_list.c

src/se2/vendor/igraph/src/core/bitset.c

src/se2/vendor/igraph/src/core/marked_queue.h

src/se2/vendor/igraph/src/core/dqueue.c

src/se2/vendor/igraph/src/core/dqueue.pmt

src/se2/vendor/igraph/src/core/error.c

src/se2/vendor/igraph/src/core/statusbar.c

src/se2/vendor/igraph/src/core/genheap.c

src/se2/vendor/igraph/src/core/memory.c

src/se2/vendor/igraph/src/core/progress.c

src/se2/vendor/igraph/src/internal/gmp_internal.h

src/se2/vendor/igraph/src/internal/glpk_support.h

src/se2/vendor/igraph/src/internal/zeroin.c

src/se2/vendor/igraph/src/internal/utils.h

src/se2/vendor/igraph/src/internal/glpk_support.c

src/se2/vendor/igraph/src/internal/qsort_r.c

src/se2/vendor/igraph/src/internal/utils.c

src/se2/vendor/igraph/src/internal/hacks.h

src/se2/vendor/igraph/src/internal/hacks.c

src/se2/vendor/igraph/src/internal/qsort.c

src/se2/vendor/igraph/src/internal/lsap.c

src/se2/vendor/igraph/src/community/fast_modularity.c

src/se2/vendor/igraph/src/community/label_propagation.c

src/se2/vendor/igraph/src/community/voronoi.c

src/se2/vendor/igraph/src/community/fluid.c

src/se2/vendor/igraph/src/community/leading_eigenvector.c

src/se2/vendor/igraph/src/community/louvain.c

src/se2/vendor/igraph/src/community/edge_betweenness.c

src/se2/vendor/igraph/src/community/modularity.c

src/se2/vendor/igraph/src/community/leiden.c

src/se2/vendor/igraph/src/community/community_misc.c

src/se2/vendor/igraph/src/community/optimal_modularity.c

src/se2/vendor/igraph/src/community/spinglass/NetDataTypes.cpp

src/se2/vendor/igraph/src/community/spinglass/pottsmodel_2.h

src/se2/vendor/igraph/src/community/spinglass/NetDataTypes.h

src/se2/vendor/igraph/src/community/spinglass/clustertool.cpp

src/se2/vendor/igraph/src/community/spinglass/pottsmodel_2.cpp

src/se2/vendor/igraph/src/community/spinglass/NetRoutines.cpp

src/se2/vendor/igraph/src/community/spinglass/NetRoutines.h

src/se2/vendor/igraph/src/community/walktrap/walktrap_graph.cpp

src/se2/vendor/igraph/src/community/walktrap/walktrap_heap.cpp

src/se2/vendor/igraph/src/community/walktrap/walktrap_communities.cpp

src/se2/vendor/igraph/src/community/walktrap/walktrap_heap.h

src/se2/vendor/igraph/src/community/walktrap/walktrap.cpp

src/se2/vendor/igraph/src/community/walktrap/walktrap_graph.h

src/se2/vendor/igraph/src/community/walktrap/walktrap_communities.h

src/se2/vendor/igraph/src/community/infomap/infomap_Node.h

src/se2/vendor/igraph/src/community/infomap/infomap_Greedy.cc

src/se2/vendor/igraph/src/community/infomap/infomap.cc

src/se2/vendor/igraph/src/community/infomap/infomap_FlowGraph.h

src/se2/vendor/igraph/src/community/infomap/infomap_Greedy.h

src/se2/vendor/igraph/src/community/infomap/infomap_FlowGraph.cc

src/se2/vendor/igraph/src/math/complex.c

src/se2/vendor/igraph/src/math/safe_intop.c

src/se2/vendor/igraph/src/math/utils.c

src/se2/vendor/igraph/src/math/safe_intop.h

src/se2/vendor/igraph/src/properties/loops.c

src/se2/vendor/igraph/src/properties/triangles_template.h

src/se2/vendor/igraph/src/properties/ecc.c

src/se2/vendor/igraph/src/properties/complete.c

src/se2/vendor/igraph/src/properties/perfect.c

src/se2/vendor/igraph/src/properties/girth.c

src/se2/vendor/igraph/src/properties/properties_internal.h

src/se2/vendor/igraph/src/properties/constraint.c

src/se2/vendor/igraph/src/properties/dag.c

src/se2/vendor/igraph/src/properties/trees.c

src/se2/vendor/igraph/src/properties/convergence_degree.c

src/se2/vendor/igraph/src/properties/triangles_template1.h

src/se2/vendor/igraph/src/properties/degrees.c

src/se2/vendor/igraph/src/properties/multiplicity.c

src/se2/vendor/igraph/src/properties/spectral.c

src/se2/vendor/igraph/src/properties/basic_properties.c

src/se2/vendor/igraph/src/properties/neighborhood.c

src/se2/vendor/igraph/src/properties/triangles.c

src/se2/vendor/igraph/src/constructors/kautz.c

src/se2/vendor/igraph/src/constructors/atlas.c

src/se2/vendor/igraph/src/constructors/regular.c

src/se2/vendor/igraph/src/constructors/circulant.c

src/se2/vendor/igraph/src/constructors/linegraph.c

src/se2/vendor/igraph/src/constructors/generalized_petersen.c

src/se2/vendor/igraph/src/constructors/full.c

src/se2/vendor/igraph/src/constructors/lcf.c

src/se2/vendor/igraph/src/constructors/basic_constructors.c

src/se2/vendor/igraph/src/constructors/de_bruijn.c

src/se2/vendor/igraph/src/constructors/trees.c

src/se2/vendor/igraph/src/constructors/lattices.c

src/se2/vendor/igraph/src/constructors/adjacency.c

src/se2/vendor/igraph/src/constructors/atlas-edges.h

src/se2/vendor/igraph/src/constructors/prufer.c

src/se2/vendor/igraph/src/constructors/famous.c

src/se2/vendor/igraph/vendor/pcg/pcg_variants.h

src/se2/vendor/igraph/vendor/pcg/pcg-output-32.c

src/se2/vendor/igraph/vendor/pcg/pcg-output-128.c

src/se2/vendor/igraph/vendor/pcg/pcg-advance-128.c

src/se2/vendor/igraph/vendor/pcg/pcg-rngs-64.c

src/se2/vendor/igraph/vendor/pcg/pcg-output-64.c

src/se2/vendor/igraph/vendor/pcg/CMakeLists.txt

src/se2/vendor/igraph/vendor/pcg/pcg-rngs-128.c

src/se2/vendor/igraph/vendor/pcg/LICENSE.txt

src/se2/vendor/igraph/vendor/pcg/pcg-advance-64.c

src/se2/vendor/igraph/vendor/cs/cs_permute.c

src/se2/vendor/igraph/vendor/cs/cs_dupl.c

src/se2/vendor/igraph/vendor/cs/cs_gaxpy.c

src/se2/vendor/igraph/vendor/cs/cs_post.c

src/se2/vendor/igraph/vendor/cs/cs.h

src/se2/vendor/igraph/vendor/cs/License.txt

src/se2/vendor/igraph/vendor/cs/cs_chol.c

src/se2/vendor/igraph/vendor/cs/cs_cumsum.c

src/se2/vendor/igraph/vendor/cs/cs_dmperm.c

src/se2/vendor/igraph/vendor/cs/cs_pinv.c

src/se2/vendor/igraph/vendor/cs/cs_qrsol.c

src/se2/vendor/igraph/vendor/cs/cs_updown.c

src/se2/vendor/igraph/vendor/cs/cs_lusol.c

src/se2/vendor/igraph/vendor/cs/cs_entry.c

src/se2/vendor/igraph/vendor/cs/cs_multiply.c

src/se2/vendor/igraph/vendor/cs/cs_compress.c

src/se2/vendor/igraph/vendor/cs/cs_ipvec.c

src/se2/vendor/igraph/vendor/cs/cs_amd.c

src/se2/vendor/igraph/vendor/cs/cs_happly.c

src/se2/vendor/igraph/vendor/cs/cs_pvec.c

src/se2/vendor/igraph/vendor/cs/cs_fkeep.c

src/se2/vendor/igraph/vendor/cs/cs_ereach.c

src/se2/vendor/igraph/vendor/cs/cs_load.c

src/se2/vendor/igraph/vendor/cs/cs_utsolve.c

src/se2/vendor/igraph/vendor/cs/cs_add.c

src/se2/vendor/igraph/vendor/cs/cs_usolve.c

src/se2/vendor/igraph/vendor/cs/cs_tdfs.c

src/se2/vendor/igraph/vendor/cs/cs_schol.c

src/se2/vendor/igraph/vendor/cs/cs_malloc.c

src/se2/vendor/igraph/vendor/cs/cs_norm.c

src/se2/vendor/igraph/vendor/cs/cs_cholsol.c

src/se2/vendor/igraph/vendor/cs/cs_scc.c

src/se2/vendor/igraph/vendor/cs/cs_maxtrans.c

src/se2/vendor/igraph/vendor/cs/cs_qr.c

src/se2/vendor/igraph/vendor/cs/cs_randperm.c

src/se2/vendor/igraph/vendor/cs/cs_print.c

src/se2/vendor/igraph/vendor/cs/cs_sqr.c

src/se2/vendor/igraph/vendor/cs/CMakeLists.txt

src/se2/vendor/igraph/vendor/cs/cs_house.c

src/se2/vendor/igraph/vendor/cs/cs_symperm.c

src/se2/vendor/igraph/vendor/cs/cs_dropzeros.c

src/se2/vendor/igraph/vendor/cs/cs_leaf.c

src/se2/vendor/igraph/vendor/cs/cs_reach.c

src/se2/vendor/igraph/vendor/cs/cs_etree.c

src/se2/vendor/igraph/vendor/cs/cs_util.c

src/se2/vendor/igraph/vendor/cs/cs_lu.c

src/se2/vendor/igraph/vendor/cs/cs_ltsolve.c

src/se2/vendor/igraph/vendor/cs/cs_transpose.c

src/se2/vendor/igraph/vendor/cs/cs_droptol.c

src/se2/vendor/igraph/vendor/cs/cs_dfs.c

src/se2/vendor/igraph/vendor/cs/cs_scatter.c

src/se2/vendor/igraph/vendor/cs/cs_counts.c

src/se2/vendor/igraph/vendor/cs/cs_lsolve.c

src/se2/vendor/igraph/vendor/cs/cs_spsolve.c

inst/doc/speakeasyR.html

inst/doc/speakeasyR.Rmd inst/doc/speakeasyR.R

build/vignette.rds

tests/testthat.R tests/testthat/test-cluster.R vignettes/speakeasyR.Rmd

tools/config.sub

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tools/ax_pthread.m4

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