Man pages for swaRmverse
Swarm Space Creation
| add_rel_pos_coords | Relative Position Coordinates |
| add_set_vels | Add Velocity Timeseries |
| add_velocities | Add Velocity Timeseries Across Sets |
| calc_dur_per_event | Duration of Each Event |
| calc_events_averages | Events Averages |
| calc_global_metrics | Calculation of Group Metrics |
| calc_n_events | Number of Events (Internal) |
| calc_nn_metrics | Relative Position of Nearest Neighbor Function to Parallelize |
| calc_obb | Minimum Bounding Box |
| calc_pairwise_metrics | Pairwise Metrics |
| col_motion_metrics | Collective Motion Metrics |
| col_motion_metrics_from_raw | Collective Motion Metrics from Raw Data |
| define_events | Define Events of Collective Motion |
| do_add_set_vels | Call Add Velocity Timeseries |
| do_add_vels | Adding Velocity Information for Individuals in Parallel... |
| do_pca | Perform PCA |
| do_tsne | Performs t-SNE |
| event_ids_per_set | Event Indexes per Set |
| event_metrics | Metrics of Collective Motion |
| events_dur | Total Duration of All Events |
| events_n | Number of Events |
| events_summary | Events Summary |
| expand_pca_swarm_space | Expand Existing Swarm Space (PCA) |
| frontness | Frontness |
| get_event_ids | Event Indexes |
| group_metrics | Group Metrics of Collective Motion |
| group_metrics_per_set | Group Metrics of Collective Motion in a Dataset |
| group_shape | Group Shape Based on a OOBB |
| moving_average | Moving Average |
| multi_species_metrics | Multi-Species Collective Motion Metrics |
| multi_species_pca | Multi-Species PCA |
| multi_species_pca_data | Multi-Species PCA Data |
| new_species_metrics | The Collective Motion Metrics of a New Species |
| nnba | Bearing Angle to Nearest Neighbor |
| nn_metrics | Nearest Neighbour Metrics |
| normalize_data | Normalize Data |
| pairwise_metrics | Pairwise Metrics of Collective Motion in a Dataset |
| parAddVels | Adding Motion Properties in Parallel without Progress Updates |
| parAddVelsVerb | Adding Individual Velocity Information in Parallel - Verbose |
| par_calc_global_metrics | Calculation of Group Metrics in Parallel |
| par_nn_metrics | Adding Motion Properties in Parallel - Verbose |
| perIdVels | Speed and Heading Calculation based on 'swaRm' Package. |
| pick_threshold | Pick a Threshold for the Events' Definition |
| set_data_format | Data Formatting |
| swarm_space | Create a Swarm Space |
| swaRmverse | swaRmverse: Swarm Space Creation |
