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syntenyPlotteR: Genome Synteny Visualization
Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.
Getting started
Browse package contents
Package details |
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| Author | Marta Farre [aut, cre, cph], Sarah Quigley [aut], Joana Damas [aut], Denis Larkin [aut] |
| Maintainer | Marta Farre <m.farre-belmonte@kent.ac.uk> |
| License | MIT + file LICENSE |
| Version | 1.0.0 |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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