Man pages for tepr
Transcription Elongation Profiling
| allauc | Calculate Area Under Curve (AUC) and Differences of AUC for... |
| attenuation | Calculate Attenuation from AUC and Other Transcript Features |
| averageandfilterexprs | Calculate Average Expression and Filter Transcript Data |
| blacklisthighmap | Blacklist High Mappability Regions in Genomic Data |
| checkexptab | Check Validity of Experiment Table |
| countna | Count NA values per transcript and condition |
| createtablescores | Create a Unified Table of Scores |
| genesECDF | Compute ECDF for Genes Based on Expression Data |
| kneeallconds | Calculate knee for each condition separately |
| kneeid | Identify the Knee and Max ECDF Differences for Each... |
| makewindows | Split Gene Annotations into Fixed-Size Windows |
| meandifference | Compute Mean and Differences of Scores for Each Condition |
| plotauc | Plot AUC Comparison Between Conditions |
| plotecdf | Plot Empirical Cumulative Distribution Function (ECDF) |
| plothistoknee | Plot Histogram of Distance from TSS to Knee Point |
| plotmetagenes | Plot Metagenes for Gene Groups |
| plotmulti | Generate all tepr plots for all experiment comparisons |
| preprocessing | Preprocess Experimental Data for Genomic Analysis |
| retrieveanno | Retrieve and Combine Annotation Information |
| showallcomp | Retrieve all the comparison names from the experiment table |
| tepr | Perform the tepr differential nascent rna-seq analysis |
| teprmulti | Perform tepr differential nascent rna-seq analysis for... |
| universegroup | Define Universe and Group of Genes Based on Expression Data |
