tidysq
Tidy Processing and Analysis of Biological Sequences

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Functions
360
Source code
91
Man pages
36
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tidysq: Tidy Processing and Analysis of Biological Sequences
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API

API for tidysq
Tidy Processing and Analysis of Biological Sequences

Global functions
%has% Man page
.onLoad Source code
==.sq Man page
CPP_apply_R_function Source code
CPP_bite Source code
CPP_collapse Source code
CPP_complement Source code
CPP_find_invalid_letters Source code
CPP_find_motifs Source code
CPP_get_standard_alphabet Source code
CPP_guess_standard_alph Source code
CPP_has Source code
CPP_obtain_alphabet Source code
CPP_pack_INTS Source code
CPP_pack_RAWS Source code
CPP_pack_STRING Source code
CPP_pack_STRINGS Source code
CPP_paste Source code
CPP_random_sq Source code
CPP_read_fasta Source code
CPP_remove_NA Source code
CPP_remove_ambiguous Source code
CPP_reverse Source code
CPP_sample_fasta Source code
CPP_substitute_letters Source code
CPP_translate Source code
CPP_typify Source code
CPP_unpack_INTS Source code
CPP_unpack_RAWS Source code
CPP_unpack_STRING Source code
CPP_unpack_STRINGS Source code
CPP_write_fasta Source code
`%has%.default` Source code
`%has%.sq_ami_ext` Source code
`%has%.sq_dna_ext` Source code
`%has%.sq_rna_ext` Source code
`%has%.sq` Source code
`%has%` Source code
`==.sq` Source code
`[.sq_alphabet` Source code
`alphabet<-` Source code
`sq_type<-.default` Source code
`sq_type<-.sq` Source code
`sq_type<-` Source code
alphabet Man page Source code
as.character.sq Man page Source code
as.matrix.sq Man page Source code
as.sq Man page Source code
as.sq.character Man page Source code
as.sq.default Man page Source code
bind_into_sqibble Source code
bite Man page Source code
bite.default Source code
bite.sq Man page Source code
check_alph_no_special_chars Source code
check_motifs_for_type Source code
check_package_installed Source code
check_sq_type Source code
check_warning_handling Source code
choose_letters_sep Source code
collapse Man page Source code
collapse.default Source code
collapse.sq Man page Source code
complement Man page Source code
complement.default Source code
complement.sq_dna_bsc Man page Source code
complement.sq_dna_ext Man page
complement.sq_rna_bsc Man page
complement.sq_rna_ext Man page
cut_sq Source code
export_sq Man page Source code
export_sq.default Source code
export_sq.sq_ami_bsc Source code
export_sq.sq_dna_bsc Source code
export_sq.sq_rna_bsc Source code
find_invalid_letters Man page Source code
find_invalid_letters.default Source code
find_invalid_letters.sq Man page Source code
find_motifs Man page Source code
find_motifs.data.frame Man page Source code
find_motifs.default Source code
find_motifs.sq Man page Source code
format.encsq Source code
format.pillar_shaft_sq Source code
format.sq Source code
format_indices Source code
format_sequences_and_lengths Source code
get_sq_lengths Man page Source code
get_standard_alphabet Man page Source code
get_tidysq_options Man page Source code
guess_standard_alphabet Source code
handle_warning_message Source code
import_sq Man page Source code
import_sq.AAString Source code
import_sq.AAStringSet Source code
import_sq.AAbin Source code
import_sq.BString Source code
import_sq.BStringSet Source code
import_sq.DNAString Source code
import_sq.DNAStringSet Source code
import_sq.DNAbin Source code
import_sq.RNAString Source code
import_sq.RNAStringSet Source code
import_sq.SeqFastaAA Source code
import_sq.SeqFastadna Source code
import_sq.XStringSetList Source code
import_sq.alignment Source code
import_sq.bioseq_aa Source code
import_sq.bioseq_dna Source code
import_sq.bioseq_rna Source code
import_sq.default Source code
import_sq.list Source code
internal_format_sq Source code
interpret_type Source code
is.sq Man page Source code
is.sq_ami Man page Source code
is.sq_ami_bsc Man page Source code
is.sq_ami_ext Man page Source code
is.sq_atp Man page Source code
is.sq_dna Man page Source code
is.sq_dna_bsc Man page Source code
is.sq_dna_ext Man page Source code
is.sq_rna Man page Source code
is.sq_rna_bsc Man page Source code
is.sq_rna_ext Man page Source code
is.sq_unt Man page Source code
is_empty_sq Man page Source code
is_empty_sq.default Source code
is_empty_sq.sq Man page Source code
obj_print_data.sq Source code
obj_print_footer.sq Source code
obj_print_header.sq Source code
obtain_alphabet Source code
pack Source code
pack.character Source code
pack.list Source code
paste Man page Source code
paste.default Source code
paste.sq Man page Source code
pillar_shaft.encsq Source code
pillar_shaft.sq Source code
pillar_shaft_sq Source code
precut_body_as_unpackeds Source code
random_sq Man page Source code
read_fasta Man page Source code
reduce_num_sequences Source code
remove_ambiguous Man page Source code
remove_ambiguous.default Source code
remove_ambiguous.sq Man page Source code
remove_na Man page Source code
remove_na.default Source code
remove_na.sq Man page Source code
reverse Man page Source code
reverse.default Source code
reverse.sq Man page Source code
size Source code
sq Man page Source code
sq-class Man page
sq-concatenate Man page
sq-extract Man page
sq-print Man page
sq_alphabet Source code
sq_alphabet_ptype Source code
sq_from_source Source code
sq_ptype Source code
sq_type Man page Source code
sq_type.default Source code
sq_type.sq Man page Source code
sq_type<- Man page
sq_type<-.sq Man page
sqapply Man page Source code
sqapply.default Source code
sqapply.sq Man page Source code
sqconcatenate Man page
sqextract Man page
sqprint Man page
stop_no_method Source code
substitute_letters Man page Source code
substitute_letters.default Source code
substitute_letters.sq Man page Source code
tidysq Man page
tidysq-options Man page
tidysq-package Man page
translate Man page Source code
translate.default Source code
translate.sq_dna_bsc Man page Source code
translate.sq_rna_bsc Man page
type_as_class Source code
typify Man page Source code
typify.default Source code
typify.sq Man page Source code
unpack Source code
vec_cast.character.sq_alphabet Source code
vec_cast.character.sq_ami_bsc Source code
vec_cast.character.sq_ami_ext Source code
vec_cast.character.sq_atp Source code
vec_cast.character.sq_dna_bsc Source code
vec_cast.character.sq_dna_ext Source code
vec_cast.character.sq_rna_bsc Source code
vec_cast.character.sq_rna_ext Source code
vec_cast.character.sq_unt Source code
vec_cast.sq_alphabet.character Source code
vec_cast.sq_alphabet.sq_alphabet Source code
vec_cast.sq_ami_bsc.character Source code
vec_cast.sq_ami_bsc.sq_ami_bsc Source code
vec_cast.sq_ami_bsc.sq_unt Source code
vec_cast.sq_ami_ext.character Source code
vec_cast.sq_ami_ext.sq_ami_bsc Source code
vec_cast.sq_ami_ext.sq_ami_ext Source code
vec_cast.sq_ami_ext.sq_unt Source code
vec_cast.sq_atp.character Source code
vec_cast.sq_atp.sq_atp Source code
vec_cast.sq_dna_bsc.character Source code
vec_cast.sq_dna_bsc.sq_dna_bsc Source code
vec_cast.sq_dna_bsc.sq_unt Source code
vec_cast.sq_dna_ext.character Source code
vec_cast.sq_dna_ext.sq_dna_bsc Source code
vec_cast.sq_dna_ext.sq_dna_ext Source code
vec_cast.sq_dna_ext.sq_unt Source code
vec_cast.sq_rna_bsc.character Source code
vec_cast.sq_rna_bsc.sq_rna_bsc Source code
vec_cast.sq_rna_bsc.sq_unt Source code
vec_cast.sq_rna_ext.character Source code
vec_cast.sq_rna_ext.sq_rna_bsc Source code
vec_cast.sq_rna_ext.sq_rna_ext Source code
vec_cast.sq_rna_ext.sq_unt Source code
vec_cast.sq_unt.character Source code
vec_cast.sq_unt.sq_ami_bsc Source code
vec_cast.sq_unt.sq_ami_ext Source code
vec_cast.sq_unt.sq_dna_bsc Source code
vec_cast.sq_unt.sq_dna_ext Source code
vec_cast.sq_unt.sq_rna_bsc Source code
vec_cast.sq_unt.sq_rna_ext Source code
vec_cast.sq_unt.sq_unt Source code
vec_ptype2.character.sq_alphabet Source code
vec_ptype2.character.sq_ami_bsc Source code
vec_ptype2.character.sq_ami_ext Source code
vec_ptype2.character.sq_atp Source code
vec_ptype2.character.sq_dna_bsc Source code
vec_ptype2.character.sq_dna_ext Source code
vec_ptype2.character.sq_rna_bsc Source code
vec_ptype2.character.sq_rna_ext Source code
vec_ptype2.character.sq_unt Source code
vec_ptype2.sq_alphabet.character Source code
vec_ptype2.sq_ami_bsc.character Source code
vec_ptype2.sq_ami_bsc.sq_ami_bsc Source code
vec_ptype2.sq_ami_bsc.sq_ami_ext Source code
vec_ptype2.sq_ami_bsc.sq_unt Source code
vec_ptype2.sq_ami_ext.character Source code
vec_ptype2.sq_ami_ext.sq_ami_bsc Source code
vec_ptype2.sq_ami_ext.sq_ami_ext Source code
vec_ptype2.sq_ami_ext.sq_unt Source code
vec_ptype2.sq_atp.character Source code
vec_ptype2.sq_atp.sq_atp Source code
vec_ptype2.sq_dna_bsc.character Source code
vec_ptype2.sq_dna_bsc.sq_dna_bsc Source code
vec_ptype2.sq_dna_bsc.sq_dna_ext Source code
vec_ptype2.sq_dna_bsc.sq_unt Source code
vec_ptype2.sq_dna_ext.character Source code
vec_ptype2.sq_dna_ext.sq_dna_bsc Source code
vec_ptype2.sq_dna_ext.sq_dna_ext Source code
vec_ptype2.sq_dna_ext.sq_unt Source code
vec_ptype2.sq_rna_bsc.character Source code
vec_ptype2.sq_rna_bsc.sq_rna_bsc Source code
vec_ptype2.sq_rna_bsc.sq_rna_ext Source code
vec_ptype2.sq_rna_bsc.sq_unt Source code
vec_ptype2.sq_rna_ext.character Source code
vec_ptype2.sq_rna_ext.sq_rna_bsc Source code
vec_ptype2.sq_rna_ext.sq_rna_ext Source code
vec_ptype2.sq_rna_ext.sq_unt Source code
vec_ptype2.sq_unt.character Source code
vec_ptype2.sq_unt.sq_ami_bsc Source code
vec_ptype2.sq_unt.sq_ami_ext Source code
vec_ptype2.sq_unt.sq_dna_bsc Source code
vec_ptype2.sq_unt.sq_dna_ext Source code
vec_ptype2.sq_unt.sq_rna_bsc Source code
vec_ptype2.sq_unt.sq_rna_ext Source code
vec_ptype2.sq_unt.sq_unt Source code
vec_ptype_abbr.sq_alphabet Source code
vec_ptype_abbr.sq_ami_bsc Source code
vec_ptype_abbr.sq_ami_ext Source code
vec_ptype_abbr.sq_atp Source code
vec_ptype_abbr.sq_dna_bsc Source code
vec_ptype_abbr.sq_dna_ext Source code
vec_ptype_abbr.sq_rna_bsc Source code
vec_ptype_abbr.sq_rna_ext Source code
vec_ptype_abbr.sq_unt Source code
vec_ptype_full.sq_alphabet Source code
vec_ptype_full.sq_ami_bsc Source code
vec_ptype_full.sq_ami_ext Source code
vec_ptype_full.sq_atp Source code
vec_ptype_full.sq_dna_bsc Source code
vec_ptype_full.sq_dna_ext Source code
vec_ptype_full.sq_rna_bsc Source code
vec_ptype_full.sq_rna_ext Source code
vec_ptype_full.sq_unt Source code
write_fasta Man page Source code
write_fasta.data.frame Man page Source code
write_fasta.default Source code
write_fasta.sq Man page Source code
tidysq documentation built on April 12, 2025, 1:37 a.m.

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