Files in tidysq

Tidy Processing and Analysis of Biological Sequences

NEWS.md README.md R/util-unpack.R R/RcppExports.R R/typify.R R/find_invalid_letters.R R/write_fasta.R R/translate.R R/util-vctrs-prototypes.R R/import_sq.R R/find_motifs.R R/alphabet.R R/util-type.R R/complement.R R/util-vctrs-names.R R/bite.R R/util-print.R R/util-checkmate-functions.R R/util-pack.R R/remove_ambiguous.R R/util-vctrs-cast.R R/catch-routine-registration.R R/remove_na.R R/read_fasta.R R/paste.R R/sq.R R/util-conditions.R R/collapse.R R/util-options.R R/has.R R/sqapply.R R/doc-tidysq.R R/is_empty_sq.R R/substitute_letters.R R/util-methods.R R/random_sq.R R/zzz.R R/doc-sq-class.R R/export_sq.R R/reverse.R R/util-format.R inst/doc/quick-start.Rmd inst/doc/advanced-alphabet.Rmd inst/doc/advanced-alphabet.R inst/doc/quick-start.R tests/testthat.R tests/spelling.R tests/testthat/test-sq_type.R tests/testthat/test-complement.R tests/testthat/setup-tests.R tests/testthat/test-pkg-seqinr.R tests/testthat/test-find_invalid_letters.R tests/testthat/test-pkg-ape.R tests/testthat/test-typify.R tests/testthat/test-sqapply.R tests/testthat/test-pack-unpack.R tests/testthat/test-is_empty_sq.R tests/testthat/test-substitute_letters.R tests/testthat/test-cpp.R tests/testthat/test-remove_ambiguous.R tests/testthat/test-paste.R tests/testthat/test-bite.R tests/testthat/test-io.R tests/testthat/test-pkg-bioseq.R tests/testthat/test-options.R tests/testthat/test-pkg-Biostrings.R tests/testthat/test-export_sq.R tests/testthat/test-has.R tests/testthat/test-concatenate.R tests/testthat/test-alphabet.R tests/testthat/test-is.R tests/testthat/test-translate.R tests/testthat/test-reverse.R tests/testthat/test-find_motifs.R tests/testthat/test-vctrs-ptype2.R tests/testthat/test-sq.R tests/testthat/test-warnings.R tests/testthat/test-collapse.R tests/testthat/test-casting.R tests/testthat/test-random_sq.R tests/testthat/test-remove_na.R vignettes/quick-start.Rmd vignettes/advanced-alphabet.Rmd man/read_fasta.Rd man/sqprint.Rd man/collapse.Rd man/translate.Rd man/is.sq.Rd man/sq-class.Rd man/find_motifs.Rd man/tidysq-package.Rd man/write_fasta.Rd man/as.matrix.sq.Rd man/reverse.Rd man/get_standard_alphabet.Rd man/equals-.sq.Rd man/sqextract.Rd man/as.character.sq.Rd man/export_sq.Rd man/substitute_letters.Rd man/grapes-has-grapes.Rd man/sqconcatenate.Rd man/paste.Rd man/as.sq.Rd man/get_sq_lengths.Rd man/import_sq.Rd man/is_empty_sq.Rd man/remove_na.Rd man/sq.Rd man/typify.Rd man/sqapply.Rd man/remove_ambiguous.Rd man/complement.Rd man/alphabet.Rd man/random_sq.Rd man/bite.Rd man/sq_type.Rd man/find_invalid_letters.Rd man/get_tidysq_options.Rd man/roxygen/meta.R man/roxygen/templates/three-dots.R man/roxygen/templates/alphabet.R man/roxygen/templates/motif_details.R man/roxygen/templates/ignore_case.R man/roxygen/templates/x.R man/roxygen/templates/dot-name.R man/roxygen/templates/dot-sq.R man/roxygen/templates/on_warning.R man/roxygen/templates/dest_type.R man/roxygen/templates/by_letter.R man/roxygen/templates/NA_letter.R man/roxygen/templates/safe_mode.R man/roxygen/templates/name.R