Man pages for ulrb
Unsupervised Learning Based Definition of Microbial Rare Biosphere

check_avgSilCheck average Silhouette score index
check_CHCheck Calinski-Harabasz index
check_DBCheck Davies-Bouldin Index
define_rbDefine Rare Biosphere
evaluate_kEvaluate k from all samples in a dataset
evaluate_sample_kEvaluate sample k
niceV4-V5 16S rRNA gene amplicons, clean OTU table (N-ICE, 2015)
nice_envMetadata of samples from OTU tables (N-ICE, 2015)
nice_rawV4-V5 16S rRNA gene amplicons, raw OTU table (N-ICE, 2015)
nice_tidyV4-V5 16S rRNA gene amplicons, clean OTU table in tidy/long...
plot_ulrbPlot ulrb clustering results and silhouette scores
plot_ulrb_clusteringPlot Rank Abundance Curve of classification results
plot_ulrb_silhouettePlot silhouette scores from clustering results
prepare_tidy_dataPrepare data in tidy format
suggest_kSuggest k
ulrb-packageulrb: Unsupervised Learning Based Definition of Microbial...
ulrb documentation built on April 11, 2025, 5:42 p.m.